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Convert provgigapath embeddings to parquet by slide/tile

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#32 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Jan 10, 2026

Resolve issues with import_tilelevel_embed.rmd

Status: Open.

#31 In waldronlab/ImageFeatureTCGA;

· LiNk-NY opened on Jan 9, 2026

Update import_features.Rmd

Status: Open.

#30 In waldronlab/ImageFeatureTCGA;

· LiNk-NY opened on Jan 9, 2026

Update MOFA_analysis.Rmd

Status: Open.

#29 In waldronlab/ImageFeatureTCGA;

· LiNk-NY opened on Jan 9, 2026

Functionality for summarizing hovernet data to bounding boxes, like image tiles.

Status: Open.

#27 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Dec 9, 2025

Create function to calculate scale factor between nuclei coordinates and tile coordinates

enhancementNew feature or requestNew feature or request

Status: Open.

#26 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Dec 9, 2025

Refactor MOFA analysis vignette using provgigapath WSI embedding

Status: Open.

#19 In waldronlab/ImageFeatureTCGA;

· Eabousam opened on Nov 25, 2025

Modify list files function to read from metadata catalog file.

Status: Open.

#18 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Nov 25, 2025

Establish and maintain hovernet and provgigapath data in r2 cloud bucket using rclone

Status: Open.

#16 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Nov 25, 2025

Functions to calculate slide-level summary statistics of HoVer-Net output

Status: Open.

#7 In waldronlab/ImageFeatureTCGA;

· shbrief opened on Nov 13, 2025