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victornemeth/README.md

👋 Hey there, I'm Victor

Welcome to my digital playground — where bioinformatics, AI, and full-stack wizardry collide. I’m passionate about shaping the future where intelligent systems, distributed infrastructure, and intuitive web experiences come together — grounded in automation and open-source principles, running on Linux.

🔬 Current Projects

  • PhaRBP a Phage Receptor Binding Protein Database Currently constructing a phage RBP database that is a collection of different sources, mainly UniProt and Genbank scanned by different TSP and TF classifiers and be filtered and used by everyone.
  • Tail Fiber / Tailspike detection tools
    Building tools to classify domains and proteins, focussing on receptor binding proteins, currently experimenting with EVO2 for this task.
  • Protein Structure Annotation Platform
    Building a web-based system to upload, visualize, and annotate PDB files using swipe-based gestures. Features include auto-rotation 3D viewers, annotation tracking, and CSV export.

Pinned Loading

  1. ProteinTinder ProteinTinder Public

    Interactive webapp for Annotating Proteins

    HTML

  2. PhageSearch PhageSearch Public

    The Phage Protein Search Engine is a tool designed to gather host-specific phage protein data.

    JavaScript 4

  3. dimiboeckaerts/PhageRBPdetection dimiboeckaerts/PhageRBPdetection Public

    Detection of phage RBPs based on protein domains and machine learning

    Jupyter Notebook 30 3

  4. ArcInstitute/evo2 ArcInstitute/evo2 Public

    Genome modeling and design across all domains of life

    Jupyter Notebook 3.3k 385

  5. evo2apptainer evo2apptainer Public

    Singularity (apptainer) container to run evo2

    8

  6. RBPdetect2 RBPdetect2 Public

    Jupyter Notebook 1