Update tsalo/nipype from nipy/nipype #1
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…me lines from travis
…RT and COVERAGE_DATA_FILE from travis again
[WIP]add new files to ants brain extraction output spec and list outputs
…re used only locally in test functions)
FIX MultiProc deadlock - thank you @ccraddock closes #1692
* upstream/master: missed skipif fixed multiproc plugin deadlock problem and re-enabled tests && not valid in python... check to make sure keep_temporary_files is defined add auto generated spec test for changed file fix error accessing brainextraction input add new files to ants brain extraction output spec and list outputs
…apnode * dorota/pytest_satrarev: it looks like codecov works at the end, removing COVERAGE_PROCESS_START and COVERAGE_DATA_FILE from travis again trying to fix coverage (codecov doesnt report anything), restoring some lines from travis removing workflows from the directories that are omitted restore get_info in nipype/__init__.py Removing nosetest from nipype/__init__.py; pytest version is missing for now fixing the travis file removing coverage from travis (so the coverage is calculated from Circle CI only) removing fixes removing scripts from tools directory that are not used anymore changing test_auto_TCompCor.py to the output of checkspecs.py adding the auto test for ACompCor changing a simple assert to np.isclose in test_icc_anova cleaning:removing pdb restring one skipif in interfaces/tests/test_io.py removing one test from interfaces/tests/test_base.py; it was repeating the same assert as the previous one fixing one assert in test_math restoring 2 tests that had only import statement, changing comments
…propriate connections
…apnode * dorota/pytest_satrarev: removing test_BEDPOSTX.py and test_XFibres.py (auto tests wont be created anyway) changing %s to format in test_maths (in all places that the strings are used only locally in test functions)
… dockerfiles after rebase)
[ENH] Dockerfile - cache neurodebian apt-key
changing the traits minimum version
removing my temporary test from previous PR
BF: Run `make specs` with CWD in PYTHONPATH
DVARS fix & improvements
tsalo
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Jun 22, 2017
Update main command for Deconvolve.
tsalo
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Nov 29, 2022
merge avneets branch into martin's branch (update add_pet_freesurfer)
tsalo
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Nov 29, 2022
RF: Unify Gzip/Gunzip, make Gzip the base class
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