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The plot_ly generic was removed from tidySingleCellExperiment. The S3 plot_ly generic is now imported from ttservice to be shared among all tidyomics packages following stemangiola/ttservice#5.

tidySingleCellExperiment now provides only the S3 plot_ly method for the SingleCellExperiment class.

A SingleCellExperiment plot_ly example was added to the documentation.

The plot_ly man page was renamed from plotly to plot_ly for consistency with the plotly package.

@william-hutchison william-hutchison changed the title Improve plot_ly importing and exporting Improve plot_ly Nov 1, 2023
@william-hutchison william-hutchison changed the title Improve plot_ly Improve plot_ly Nov 1, 2023
@stemangiola stemangiola merged commit 1794377 into tidyomics:master Nov 2, 2023
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