Upgrade NumPy to 1.20.3, SciPy 1.6.3, networkx 2.5.1

[mkoeppe]

The upgrade to 1.20.x https://numpy.org/devdocs/release/1.20.0-notes.html require dropping support for Python 3.6

• 1.20.0rc1 released 2020-12-03 - https://pypi.org/project/numpy/#history

Depends on #31860

CC: @slel @kiwifb

Component: packages: standard

Author: Antonio Rojas, Matthias Koeppe

Branch/Commit: 02f6848

Reviewer: Dima Pasechnik

Issue created by migration from https://trac.sagemath.org/ticket/31008

[antonio-rojas]

Branch: u/arojas/upgrade_numpy_to_1_20_x____needs_python____3_7

[antonio-rojas]

Author: Antonio Rojas

[antonio-rojas]

comment:2

The type aliases numpy.int, numpy.complex and numpy.float are now deprecated

---

New commits:

55fb295	Don't use deprecated numpy type aliases
022d34a	Update numpy to 1.20.1

[antonio-rojas]

Commit: 022d34a

[mkoeppe]

comment:3

Assuming the fixes to src/sage also work for 1.19.x, I'd suggest to put them on a separate ticket so we can get them in Sage 9.3. The upgrade itself will have to wait as it requires dropping python3.6 support

[antonio-rojas]

Changed dependencies from #30551 to #30551 #31364

[antonio-rojas]

comment:4

Done, #31364

[mkoeppe]

Changed branch from u/arojas/upgrade_numpy_to_1_20_x____needs_python____3_7 to u/mkoeppe/upgrade_numpy_to_1_20_x____needs_python____3_7

[mkoeppe]

Last 10 new commits:

66c2987	build/pkgs/{sage_sws2rst,sage_docbuild}/install-requires.txt: New
7f8ec6c	build/pkgs/sagelib/src/tox.ini: Add factor sitepackages
0283da5	build/make/Makefile.in: Add wheel, setuptools_wheel to PYTHON_TOOLCHAIN to make sure that PEP 517 packages have a complete build system
f720722	build/pkgs/sagelib/src/tox.ini: Add factor nobuildisolation
c451b31	src/setup.cfg.m4 (install_requires): Add sage_conf
6700223	Merge tag '9.3.rc0' into t/30913/sagelib__add_setup_cfg__install_requires_
04da2c6	build/pkgs/ipywidgets: Patch out declaring install-requires of nbformat and jupyterlab-widgets
815c944	Merge #30913
b06731c	Remove Python 3.6 support from metadata and documentation
57338c1	Update numpy to 1.20.2, scipy to 1.6.2, networkx to 2.5.1

[mkoeppe]

Changed dependencies from #30551 #31364 to #30551

[mkoeppe]

Changed commit from 022d34a to 57338c1

[mkoeppe]

Description changed:

--- 
+++ 
@@ -1,4 +1,4 @@
-The upgrade to 1.20.x https://numpy.org/devdocs/release/1.20.0-notes.html would require dropping support for Python 3.6
+The upgrade to 1.20.x https://numpy.org/devdocs/release/1.20.0-notes.html require dropping support for Python 3.6
 
 - 1.20.0rc1 released 2020-12-03 - https://pypi.org/project/numpy/#history
 

[mkoeppe]

Changed author from Antonio Rojas to Antonio Rojas, Matthias Koeppe

[sagetrac-git]

Changed commit from 57338c1 to 02f6848