Skip to content

ImportError: libGL.so.1: cannot open shared object file #1615

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Closed
vfdev-5 opened this issue Feb 5, 2021 · 3 comments · Fixed by #1628 or #1643
Closed

ImportError: libGL.so.1: cannot open shared object file #1615

vfdev-5 opened this issue Feb 5, 2021 · 3 comments · Fixed by #1628 or #1643
Assignees
@fco-dv
Labels
bug

Comments

@vfdev-5
Copy link
Contributor

vfdev-5 commented Feb 5, 2021 •
edited
Loading

🐛 Bug description

Using pytorchignite/hvd-apex-vision

python -c "import cv2"
> Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/opt/conda/lib/python3.8/site-packages/cv2/__init__.py", line 5, in <module>
    from .cv2 import *
ImportError: libGL.so.1: cannot open shared object file: No such file or directory

Same for vision and apex-vision images:

docker run --rm -it pytorchignite/apex-vision python -c "import cv2"
docker run --rm -it pytorchignite/vision python -c "import cv2"

Environment

  • PyTorch Version (e.g., 1.4):
  • Ignite Version (e.g., 0.3.0):
  • OS (e.g., Linux):
  • How you installed Ignite (conda, pip, source):
  • Python version:
  • Any other relevant information:

cc @fco-dv
@vfdev-5 vfdev-5 added the bug label Feb 5, 2021
@vfdev-5
Copy link
Contributor Author

vfdev-5 commented Feb 5, 2021

A fix could be to install opencv-python-headless and not opencv-python. It would be nice to add a test after building the image: python -c "import cv".

@fco-dv
Copy link
Contributor

fco-dv commented Feb 9, 2021

Thanks for the hints @vfdev-5 !

fco-dv added a commit to fco-dv/ignite that referenced this issue Feb 9, 2021
@fco-dv
pytorch#1615 : add check_opencv function in 'build_all.sh' for 'visio…
f0aebcb 
…n' . Switch to 'opencv-python-headless'.
@fco-dv fco-dv mentioned this issue Feb 10, 2021
Merged
3 tasks
fco-dv added a commit to fco-dv/ignite that referenced this issue Feb 10, 2021
@fco-dv
pytorch#1615 : change nproc_per_node default to 4
3d8f232
fco-dv added a commit to fco-dv/ignite that referenced this issue Feb 10, 2021
@fco-dv
pytorch#1615 : fix for gpu enabled tests / container rm step at the e…
27c7662 
…nd of the script
vfdev-5 added a commit that referenced this issue Feb 14, 2021
@fco-dv @vfdev-5 @sdesrozis
Fix multinode tests script (#1631)
1588081 
* fix run_multinode_tests_in_docker.sh : run tests with docker python version

* add missing modules

* build an image with test env and add 'nnodes' 'nproc_per_node' 'gpu' as parameters

* #1615 : change nproc_per_node default to 4

* #1615 : fix for gpu enabled tests / container rm step at the end of the script

* add xfail decorator for tests/ignite/engine/test_deterministic.py::test_multinode_distrib_cpu

* fix script gpu_options

* add default tol=1e-6 for _test_distrib_compute_on_criterion

* fix for "RuntimeError: trying to initialize the default process group twice!"

* tolerance for test_multinode_distrib_cpu case only

* fix assert None error

* autopep8 fix

Co-authored-by: vfdev <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>
Co-authored-by: fco-dv <[email protected]>
vfdev-5 added a commit that referenced this issue Feb 15, 2021
@fco-dv @vfdev-5
#1615 : add check_opencv function in 'build_all.sh' for 'vision' . Sw…
5f3e573 
…itch to 'opencv-python-headless'. (#1628)

Co-authored-by: vfdev <[email protected]>
@vfdev-5 vfdev-5 mentioned this issue Feb 15, 2021
Merged
3 tasks
fco-dv added a commit to fco-dv/ignite that referenced this issue Feb 15, 2021
@fco-dv @vfdev-5 @sdesrozis
Fix multinode tests script (pytorch#1631)
1f47f3f 
* fix run_multinode_tests_in_docker.sh : run tests with docker python version

* add missing modules

* build an image with test env and add 'nnodes' 'nproc_per_node' 'gpu' as parameters

* pytorch#1615 : change nproc_per_node default to 4

* pytorch#1615 : fix for gpu enabled tests / container rm step at the end of the script

* add xfail decorator for tests/ignite/engine/test_deterministic.py::test_multinode_distrib_cpu

* fix script gpu_options

* add default tol=1e-6 for _test_distrib_compute_on_criterion

* fix for "RuntimeError: trying to initialize the default process group twice!"

* tolerance for test_multinode_distrib_cpu case only

* fix assert None error

* autopep8 fix

Co-authored-by: vfdev <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>
Co-authored-by: fco-dv <[email protected]>
vfdev-5 added a commit that referenced this issue Feb 17, 2021
@vfdev-5 @fco-dv @sdesrozis
#1615 : add check_opencv function in 'build_all.sh' for 'vision' . (#…
e81767b 
…1643)

* #1615 : add check_opencv function in 'build_all.sh' for 'vision' . Switch to 'opencv-python-headless'. (#1628)

Co-authored-by: vfdev <[email protected]>

* fix script bash -> sh

Co-authored-by: François COKELAER <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>
vfdev-5 added a commit that referenced this issue Feb 21, 2021
@fco-dv @vfdev-5
@ahmedo42 @1nF0rmed @pradyumnar-sahaj @sdesrozis @Devanshu24 @sparkingdark
ddp precision recall (#1646)
7753eab 
* Recall/Precision metrics for ddp : average == false and multilabel == true

* For v0.4.3 - Add more versionadded, versionchanged tags - Change v0.5… (#1612)

* For v0.4.3 - Add more versionadded, versionchanged tags - Change v0.5.0 to v0.4.3

* Update ignite/contrib/metrics/regression/canberra_metric.py

Co-authored-by: vfdev <[email protected]>

* Update ignite/contrib/metrics/regression/manhattan_distance.py

Co-authored-by: vfdev <[email protected]>

* Update ignite/contrib/metrics/regression/r2_score.py

Co-authored-by: vfdev <[email protected]>

* Update ignite/handlers/checkpoint.py

Co-authored-by: vfdev <[email protected]>

* address PR comments

Co-authored-by: vfdev <[email protected]>

* added TimeLimit handler with its test and doc (#1611)

* added TimeLimit handler with its test and doc

* fixed documentation

* fixed docstring and formatting

* flake8 fix trailing whitespace :)

* modified class logger , default value and tests

* changed rounding to nearest integer

* tests refactored , docs modified

* fixed default value , removed global logger

* fixing formatting

* Added versionadded

* added test for engine termination

Co-authored-by: vfdev <[email protected]>

* Update handlers to use setup_logger (#1617)

* Fixes #1614
- Updated handlers EarlyStopping and TerminateOnNan
- Replaced `logging.getLogger` with `setup_logger` in the mentioned handlers

* Updated `TimeLimit` handler.
Replaced use of `logger.getLogger` with `setup_logger` from `ignite.utils`

Co-authored-by: Pradyumna Rahul K <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>

* Managing Deprecation using decorators (#1585)

* Starter code for managing deprecation

* Make functions deprecated using the `@deprecated` decorator
* Add arguments to the @deprecated decorator to customize it for each function

* Improve `@deprecated` decorator and add tests

* Replaced the `raise` keyword with added `warnings`
* Added tests several possibilities of the decorator usage

* Removing the test deprecation to check tests

* Add static typing, fix mypy errors

* Make `@deprecated` to raise Exceptions or Warning

* The `@deprecated` decorator will now always emit warning unless explicitly asked to raise an Exception

* Fix mypy errors

* Fix mypy errors (hopefully)

* Fix the test `test_deprecated_setup_any_logging`

* Change the test to work with the `@deprecated` decorator

* Change to snake_case, handle mypy ignores

* Improve Type Annotations

* Update common.py

* For v0.4.3 - Add more versionadded, versionchanged tags - Change v0.5… (#1612)

* For v0.4.3 - Add more versionadded, versionchanged tags - Change v0.5.0 to v0.4.3

* Update ignite/contrib/metrics/regression/canberra_metric.py

Co-authored-by: vfdev <[email protected]>

* Update ignite/contrib/metrics/regression/manhattan_distance.py

Co-authored-by: vfdev <[email protected]>

* Update ignite/contrib/metrics/regression/r2_score.py

Co-authored-by: vfdev <[email protected]>

* Update ignite/handlers/checkpoint.py

Co-authored-by: vfdev <[email protected]>

* address PR comments

Co-authored-by: vfdev <[email protected]>

* `version` -> version

Co-authored-by: vfdev <[email protected]>
Co-authored-by: François COKELAER <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>

* Create documentation.md

* Distributed tests on Windows should be skipped until fixed. (#1620)

* modified CONTRIBUTING.md

* bash instead of sh

* Added Checkpoint.get_default_score_fn (#1621)

* Added Checkpoint.get_default_score_fn to simplify best_model_handler creation

* Added score_sign argument

* Updated docs

* Update about.rst

* Update pre-commit hooks and CONTRIBUTING.md (#1622)

* Change pre-commit config and CONTRIBUTING.md

- Update hook versions
- Remove seed-isort-config
- Add black profile to isort

* Fix files based on new pre-commit config

* Add meaningful exclusions to prettier

- Also update actions workflow files to match local pre-commit

* added requirements.txt and updated readme.md (#1624)

* added requirements.txt and updated readme.md

* Update examples/contrib/cifar10/README.md

Co-authored-by: vfdev <[email protected]>

* Update examples/contrib/cifar10/requirements.txt

Co-authored-by: vfdev <[email protected]>

Co-authored-by: vfdev <[email protected]>

* Replace relative paths with raw.githubusercontent (#1629)

* Updated cifar10 example (#1632)

* Updates for cifar10 example

* Updates for cifar10 example

* More updates

* Updated code

* Fixed code-formatting

* Fixed failling CI and typos for cifar10 examples (#1633)

* Updates for cifar10 example

* Updates for cifar10 example

* More updates

* Updated code

* Fixed code-formatting

* Fixed typo and failing CI

* Fixed hvd spawn fail and better synced qat code

* Removed temporary hack to install pth 1.7.1 (#1638)

- updated default pth image for gpu tests
- updated TORCH_CUDA_ARCH_LIST
- fixed /merge -> /head in trigger ci pipeline

* [docker] Pillow -> Pillow-SIMD (#1509) (#1639)

* [docker] Pillow -> Pillow-SIMD (#1509)

* [docker] Pillow -> Pillow-SIMD

* replace pillow with pillow-simd in base docker files

* chore(docker): apt-get autoremove after pillow-simd installation

* apt-get install at once, autoremove g++

* install g++ in pillow installation layer

Co-authored-by: Sylvain Desroziers <[email protected]>

* Fix g++ install issue

Co-authored-by: Jeff Yang <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>

* Fix multinode tests script (#1631)

* fix run_multinode_tests_in_docker.sh : run tests with docker python version

* add missing modules

* build an image with test env and add 'nnodes' 'nproc_per_node' 'gpu' as parameters

* #1615 : change nproc_per_node default to 4

* #1615 : fix for gpu enabled tests / container rm step at the end of the script

* add xfail decorator for tests/ignite/engine/test_deterministic.py::test_multinode_distrib_cpu

* fix script gpu_options

* add default tol=1e-6 for _test_distrib_compute_on_criterion

* fix for "RuntimeError: trying to initialize the default process group twice!"

* tolerance for test_multinode_distrib_cpu case only

* fix assert None error

* autopep8 fix

Co-authored-by: vfdev <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>
Co-authored-by: fco-dv <[email protected]>

* remove warning for average=False and is_multilabel=True

* update docstring and {precision, recall} tests according to test_multilabel_input_NCHW

Co-authored-by: vfdev <[email protected]>
Co-authored-by: Ahmed Omar <[email protected]>
Co-authored-by: Pradyumna Rahul <[email protected]>
Co-authored-by: Pradyumna Rahul K <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>
Co-authored-by: Devanshu Shah <[email protected]>
Co-authored-by: Debojyoti Chakraborty <[email protected]>
Co-authored-by: Jeff Yang <[email protected]>
Co-authored-by: fco-dv <[email protected]>
vfdev-5 added a commit that referenced this issue Mar 3, 2021
@vfdev-5 @fco-dv @sdesrozis
#1615 : add check_opencv function in 'build_all.sh' for 'vision' . (#…
ee2fc42 
…1643)

* #1615 : add check_opencv function in 'build_all.sh' for 'vision' . Switch to 'opencv-python-headless'. (#1628)

Co-authored-by: vfdev <[email protected]>

* fix script bash -> sh

Co-authored-by: François COKELAER <[email protected]>
Co-authored-by: Sylvain Desroziers <[email protected]>
@net777oz
Copy link

A fix could be to install opencv-python-headless and not opencv-python. It would be nice to add a test after building the image: python -c "import cv".

Got damn good person, U saved me.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@fco-dv fco-dv

Labels
bug
Projects
None yet
Milestone
No milestone
3 participants
@vfdev-5 @fco-dv @net777oz