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Failing to run PGGB on LSF cluster

Status: Open.

#475 In pangenome/pggb;

· nir-oshra opened on Dec 3, 2025

pggb did not report an error, but it was interrupted

Status: Open.

#474 In pangenome/pggb;

· zjwang6 opened on Nov 24, 2025

Remove specific haplotype genomes from PGGB GFA output and regenerate a consistent graph

Status: Open.

#473 In pangenome/pggb;

· suying77 opened on Nov 19, 2025

Alternate logo

Status: Open.

#472 In pangenome/pggb;

· SauersML opened on Oct 31, 2025

smoothxg::(1-3)::smooth_and_lace

Status: Open.

#471 In pangenome/pggb;

· guo23e opened on Sep 25, 2025

The running speed is too slow.

Status: Open.

#470 In pangenome/pggb;

· guo23e opened on Sep 21, 2025

PGGB crash with no error

Status: Open.

#469 In pangenome/pggb;

· SamCT opened on Aug 20, 2025

Why does my PGGB graph look different from the tutorial example?

Status: Open.

#464 In pangenome/pggb;

· lcyi0208 opened on Jul 20, 2025

smoothxg drops path from graph during smoothing

Status: Open.

#462 In pangenome/pggb;

· AdamCicherski opened on Jul 13, 2025

Singularity run failed on large dataset

Status: Open.

#459 In pangenome/pggb;

· Chenglin20170390 opened on May 24, 2025

Singularity command - warns about -V usage

Status: Open.

#456 In pangenome/pggb;

· cmdcolin opened on Apr 30, 2025

--max-edge-jump vs --max-path-jump

Status: Open.

#450 In pangenome/pggb;

· COMInterop opened on Mar 2, 2025