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1 change: 1 addition & 0 deletions doc/source/whatsnew/v1.5.0.rst
Original file line number Diff line number Diff line change
Expand Up @@ -917,6 +917,7 @@ Missing
- Bug in :meth:`DataFrame.interpolate` with object-dtype column not returning a copy with ``inplace=False`` (:issue:`45791`)
- Bug in :meth:`DataFrame.dropna` allows to set both ``how`` and ``thresh`` incompatible arguments (:issue:`46575`)
- Bug in :meth:`DataFrame.fillna` ignored ``axis`` when :class:`DataFrame` is single block (:issue:`47713`)
- Bug in :meth:`DataFrame.fillna` not working on multiindexed DataFrame (:issue:`47649`)

MultiIndex
^^^^^^^^^^
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9 changes: 7 additions & 2 deletions pandas/core/generic.py
Original file line number Diff line number Diff line change
Expand Up @@ -6674,9 +6674,14 @@ def fillna(
if k not in result:
continue
downcast_k = downcast if not is_dict else downcast.get(k)
result.loc[:, k] = result[k].fillna(
v, limit=limit, downcast=downcast_k
# GH47649
result.loc[:, k] = (
result[k].fillna(v, limit=limit, downcast=downcast_k).values
)
# TODO: result.loc[:, k] = result.loc[:, k].fillna(
# v, limit=limit, downcast=downcast_k
# )
# Revert when GH45751 is fixed
return result if not inplace else None

elif not is_list_like(value):
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28 changes: 28 additions & 0 deletions pandas/tests/frame/methods/test_fillna.py
Original file line number Diff line number Diff line change
Expand Up @@ -708,6 +708,34 @@ def test_single_block_df_with_horizontal_axis(self):
)
tm.assert_frame_equal(result, expected)

def test_fillna_with_multi_index_frame(self):
# GH 47649
pdf = DataFrame(
{
("x", "a"): [np.nan, 2.0, 3.0, 4.0, np.nan, 6.0],
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Could you simplify the DataFrame? 2 rows should be sufficient.

Also please add a test with ea dtypes

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Sure, could you be more specific about what dtypes we want in the test?

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Int64 for example

("x", "b"): [1.0, 2.0, np.nan, 4.0, np.nan, np.nan],
("y", "c"): [1.0, 2.0, 3.0, 4.0, np.nan, np.nan],
}
)
expected = DataFrame(
{
("x", "a"): [-1.0, 2.0, 3.0, 4.0, -1.0, 6.0],
("x", "b"): [1.0, 2.0, -1.0, 4.0, -1.0, -1.0],
("y", "c"): [1.0, 2.0, 3.0, 4.0, np.nan, np.nan],
}
)
tm.assert_frame_equal(pdf.fillna({"x": -1}), expected)
tm.assert_frame_equal(pdf.fillna({"x": -1, ("x", "b"): -2}), expected)

expected = DataFrame(
{
("x", "a"): [-1.0, 2.0, 3.0, 4.0, -1.0, 6.0],
("x", "b"): [1.0, 2.0, -2.0, 4.0, -2.0, -2.0],
("y", "c"): [1.0, 2.0, 3.0, 4.0, np.nan, np.nan],
}
)
tm.assert_frame_equal(pdf.fillna({("x", "b"): -2, "x": -1}), expected)


def test_fillna_nonconsolidated_frame():
# https://github.com/pandas-dev/pandas/issues/36495
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