Imageomics Institute

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80 repositories

HDR-SMood-Challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Scientific Mood ML Challenge.
Python
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MIT License
•0•2•0•2•Updated Aug 7, 2025Aug 7, 2025
Image-Datapalooza-2023
Public
Repository for the Image Datapalooza 2023 event held at OSU in August 2023.
Creative Commons Zero v1.0 Universal
•2•3•8•0•Updated Aug 6, 2025Aug 6, 2025
HDR-anomaly-challenge-sample
Public
Sample Submission Repository for the 2024 HDR Anomaly Challenge
sample-code anomaly-detection butterflies ml-challenge
Jupyter Notebook
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MIT License
•4•6•1•4•Updated Aug 6, 2025Aug 6, 2025
HDR-anomaly-challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Anomaly ML Challenge.
anomaly-detection butterflies hybrid-detection ml-challenge
Python
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MIT License
•1•4•1•4•Updated Aug 6, 2025Aug 6, 2025
mmla
Public
Scripts for MMLA dataset
drones zebra giraffe
Jupyter Notebook
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MIT License
•0•3•0•9•Updated Aug 6, 2025Aug 6, 2025
kabr-tools
Public
Tools for working with data for annotating animal behavior. These were specifically designed during construction of the KABR dataset.
annotation animal-behavior-recognition drone-videos
Python
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MIT License
•0•4•17•8•Updated Aug 6, 2025Aug 6, 2025
naturelab
Public
Bridging Digital and Natural Worlds at The Wilds
drone biology gps-tracker ecology multi-modal camera-traps bioacoustics
Jupyter Notebook
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MIT License
•2•0•0•0•Updated Aug 5, 2025Aug 5, 2025
hpc-inference
Public
A high-performance computing solution for efficient batch inference on large-scale image datasets.
Python
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MIT License
•0•0•10•2•Updated Aug 1, 2025Aug 1, 2025
ai-ready-infrastructure
Public
Repository for the Requirements Workshop: AI-Ready Ecology/Biodiversity Data Infrastructure.
0•0•0•0•Updated Jul 31, 2025Jul 31, 2025
Imageomics-guide
Public
Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.
git metadata documentation data guide best-practices models projects collaborative-workflows cli-cheatsheet
Python
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Creative Commons Zero v1.0 Universal
•0•4•16•1•Updated Jul 30, 2025Jul 30, 2025
pybioclip
Public
Python package that simplifies using the BioCLIP foundation model.
Python
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MIT License
•7•36•5•1•Updated Jul 30, 2025Jul 30, 2025
bioclip-vector-db
Public
Vector database training data retrieval of BioCLIP-embedded nearest neighbors.
Jupyter Notebook
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MIT License
•1•0•7•3•Updated Jul 26, 2025Jul 26, 2025
TaxonoPy
Public
A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier
Python
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MIT License
•0•1•7•1•Updated Jul 24, 2025Jul 24, 2025
Imageomics-NeurIPS-2025
Public
Imageomics: Discovering Biological Knowledge from Images Using AI workshop at NeurIPS 2025
HTML
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Creative Commons Zero v1.0 Universal
•0•0•0•0•Updated Jul 24, 2025Jul 24, 2025
TraitBlender
Public
Blender addon for simulating raw datasets under known evolutionary models
images evolution phylogenetic-trees phylogenetics simulations raw-data blender-addon 3d-models
Python
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MIT License
•1•1•0•0•Updated Jul 22, 2025Jul 22, 2025
dna-trait-analysis
Public
Goal: to find associations between dna data and visual traits.
Jupyter Notebook
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MIT License
•0•4•7•0•Updated Jul 17, 2025Jul 17, 2025
TreeOfLife-toolbox
Public
Source-specific tools for processing data (images) downloaded using distributed downloader and relies on MPI.
face-detection citizen-science image-filtering animal-detection specimen-records tree-of-life imageomics dataset-processing
Jupyter Notebook
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MIT License
•0•1•9•19•Updated Jul 14, 2025Jul 14, 2025
2025-08-15-osu-online
Public
Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility
HTML
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Other
•0•0•0•0•Updated Jul 2, 2025Jul 2, 2025
pygbif
Public
GBIF Python client
Python
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MIT License
•35•0•0•1•Updated Jul 2, 2025Jul 2, 2025
char-sim
Public
Pipeline to create model for comparing character state descriptions including ontology similarity
Python
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MIT License
•1•0•5•1•Updated Jun 30, 2025Jun 30, 2025
cautious-robot
Public
Simple images from CSV downloader that runs and records checksums on downloaded image folder.
csv download images checksums verifier downsized
Python
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MIT License
•0•4•8•0•Updated Jun 25, 2025Jun 25, 2025
sum-buddy
Public
Generate and save checksums for all (or certain) contents of given directory.
metadata csv images checksums deduplication verifier file-verification
Python
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MIT License
•0•3•5•1•Updated Jun 24, 2025Jun 24, 2025
FuncaPalooza-2025
Public
FuncaPalooza: collaborative hands-on event for extracting functional traits from images at OSU, Aug 18-21, 2025.
Creative Commons Zero v1.0 Universal
•0•4•1•0•Updated Jun 13, 2025Jun 13, 2025
bioclip-2
Public
Repository for the BioCLIP 2 model project.
computer-vision taxonomy biology clip knowledge-guided-machine-learning imageomics
Python
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Other
•4•30•1•0•Updated Jun 12, 2025Jun 12, 2025
bioclip
Public
This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].
computer-vision taxonomy clip knowledge-guided-machine-learning imageomics
Python
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Other
•22•214•2•0•Updated Jun 11, 2025Jun 11, 2025
distributed-downloader
Public
MPI-based distributed downloading tool for retrieving data from diverse domains.
downloader dataset-generation mpi-applications
Python
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MIT License
•0•3•4•0•Updated Jun 4, 2025Jun 4, 2025
wildwing
Public
Autonomous UAS Software for In Situ Imageomics Missions
drone animals autonomy
HTML
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MIT License
•1•5•11•5•Updated May 30, 2025May 30, 2025
ml-morph
Public
Machine-learning-based morphometrics
Python
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GNU General Public License v3.0
•11•0•0•0•Updated May 28, 2025May 28, 2025
EcoPalette
Public
Integration of environmental data into species images to assess model accuracy importance.
R
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MIT License
•0•0•0•0•Updated May 8, 2025May 8, 2025
SST
Public
Official repo for paper "Static Segmentation by Tracking: A Frustratingly Label-Efficient Approach to Fine-Grained Segmentation"
Python
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MIT License
•1•9•0•4•Updated Apr 29, 2025Apr 29, 2025