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nipy / nipype Public

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Pytest#1722

Merged

satra merged 84 commits intonipy:masternipy/nipype:masterfrom

djarecka:pytestdjarecka/nipype:pytestCopy head branch name to clipboard

Dec 10, 2016

Conversation Commits84 (84)Checks Files changed

Merged

Pytest#1722
satra merged 84 commits intonipy:masterfrom
djarecka:pytest

Commits

Commits on Dec 9, 2016

pytest version of test_utility
djarecka
committed
removing nose from travis, testing already rewritten tests using pytest
djarecka
committed
changing tests: removing yield and nose library, introducing pytest parametrize, fixture, skipif, shortening a few functions
djarecka
committed
removing extra imports within functions
djarecka
committed
the simplest change to py.test; all class structure is the same
djarecka
committed
changing import statements
djarecka
committed
adding previously changed tests to pytest (forgot to do it, so they were not tested by travis)
djarecka
committed
removing nose/unittest library and adding py.test; didn't change the structure
djarecka
committed
changing tests in test_base to py.test: removing nose library, changing asserts, fixture for creating files, some problems with exceptions
djarecka
committed
small editing in various files
djarecka
committed
testing py.test and the test_bunch_hash; I don't understand behavior, but adding pdb.set_trace() or running py.test -s could change the output of the test
djarecka
committed
checking if the object is a string and a path in get_bunch_hash; pytest with and without output capturing should work
djarecka
committed
changing generator of auto-tests, tools/checkspecs.py, so it uses assert, not yield asser_equal; all test_auto* were changed (running python2 tools/checkspec
djarecka
committed
testing all interface/tests using py.test (still doesnt check all nipype, have some errors/fails that could be related to yield)
djarecka
committed
removing assert_equal and imports that are not used
djarecka
committed
changing unittest to pytest
djarecka
committed
changing test_spec_JoinFusion (ants) to pytest
djarecka
committed
adding interface/ants to travis
djarecka
committed
moving to pytest the fsl tests
djarecka
committed
finished fsl/tests/test_maths: the general structure of the file was changed significantly, created fixture with params, no big changes with tests function; test_stdimage is failing
djarecka
committed
fixing for python3
djarecka
committed
changing more tests from fsl to pytest
djarecka
committed
changing last tests from fsl to pytest (still have 3 failed, i believe they should fail); adding fsl to travis file
djarecka
committed
testing freesurface with travis
djarecka
committed
changing tests to pytest within spm
djarecka
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changing rest of the tests from spm to pytest; including in travis
djarecka
committed
changing tests from nitime to pytest; including in travis
djarecka
committed
changing tests from freesurface to pytest; did NOT run them (test containers do not have freesurface)
djarecka
committed
fixing some fixtures
djarecka
committed
running pytest on full interface dir; it still have 3 failures from fsl and some test that are always skipped
djarecka
committed
temporal version without new auto tests, just checking something
djarecka
committed
coming back to the new auto tests
djarecka
committed
temporarily removing the assert that gives 3 failing tests
djarecka
committed
removing classmethod decorator (they were not really classmethods)
djarecka
committed
changing tests from algorithms to pytest; leaving mock library in one test
djarecka
committed
changing pipeline tests to pytest; some tests are xfail without any description
djarecka
committed
changing caching tests to pytest
djarecka
committed
changing testing tests to pytest; still should remove mock
djarecka
committed
changing tests from utils to pytest
djarecka
committed
changing tests from workflow to pytest; there is still mock library used
djarecka
committed
including changes from #1707
djarecka
committed
running py.test for whole nipype
djarecka
committed
fixing the problem with test_BaseInterface (resetting the input_spec)
djarecka
committed
small cleaning
djarecka
committed
removing skipif from a new test (skipif is already applied to whole class)
djarecka
committed
changing assertRaisesRegexp from unittest to pytest.raises_regexp; pytest-raisesregexp plugin has to be installed
djarecka
committed
adjusting a new test to pytest
djarecka
committed
adding pytest-raisesregexp installation to travis
djarecka
committed
fixing the travis file
djarecka
committed
a small adjustment to on auto test after rebase
djarecka
committed
small cleaning after rebase
djarecka
committed
changing # doctest: +IGNORE_UNICODE to # doctest: +ALLOW_UNICODE; +IGNORE_UNICODE does not work with pytest
djarecka
committed
checking doctest with pytest; had to install click library; 3 doctest will probably fail
djarecka
committed
fixing travis file
djarecka
committed
fixing travis file
djarecka
committed
changing 2 docstrings to pass pytest with doctests
djarecka
committed
fixing multiproc test
djarecka
committed
changing the circle runs: it runs a new script run_pytest.sh instead of run_nosetests.sh; run_pytests needs some more work; does not create xml files that can be used by codecov (testing pytest-cov)
djarecka
committed
trying to use xml files and flags with codecov
djarecka
committed
fixing xml file names
djarecka
committed
updating my comments within run_pytest
djarecka
committed
updating multiproc tests after rebasing
djarecka
committed
updating preprocess tests after rebasing; had to fix one line (waiting for a confirmation from the author)
djarecka
committed
changing requirements.txt and info.py: removing nose and doctest-ignore-unicode, adding pytest; removing extra installation from travis
djarecka
committed
changing pip to conda in test_pytest.sh
djarecka
committed
fixing TESTS_REQUIRES in info.py
djarecka
committed
removing notes about mocking and patching; will create another PR
djarecka
committed
removing install pytest from travis and run_pytest; both travis and circle run pip install requirements.txt first (circle is building new containers that depend on the current version of the file)
djarecka
committed
removing the comments that described my changes
djarecka
committed
removing tests that contained import statements only
djarecka
committed
applying my suggestions from my notes
djarecka
committed
removing my notes regarding further improvements or my small concerns
djarecka
committed
removing notes/questions from run_pytest
djarecka
committed
removing run_nosetest script
djarecka
committed
explicitly importing numpy.testing where assert_equal or assert_almost_equal from numpy is used; small cleaning of imports that are not used
djarecka
committed
removing some remnants of nose in test functions or docstrings
djarecka
committed
updating rtd_requirements.txt and doc/devel/testing_nipype.rst to the pytest testing framework
djarecka
committed
changing Makefile: updating test-code and test-coverage, removed test-doc
djarecka
committed
checking sys.version_info instead of TRAVIS_PYTHON_VERSION in the multiproc tests
djarecka
committed
fixing test_confounds.py after rebasing
djarecka
committed
all test with plugin= has been mark as skipped until the issue is solved
djarecka
committed
fixing the last commit
djarecka
committed
removing pip install nose from Dockerfiles
djarecka
committed
removing nose from new tests after rebasing
djarecka
committed

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