N4 error in NiBabies 25.0.0

[moser297]

What happened?

When running NiBabies 25.0.0 with M-CRIB-S surface reconstruction and externally derived masks and segmentations, an error occurs during the N4 BiasFieldCorrection workflow stating that the tolerance between image and mask is exceeded (despite them having the exact same file header).

What command did you use?

env -i ${singularity} run --cleanenv \
-B ${in_dir}:/data:ro \
-B ${out_dir}/:/out \
-B ${nwork_dir}/:/work \
-B ${bibsnet_dir}/:/bibsnet \
-B /path/freesurfer_license/license.txt:/opt/freesurfer/license.txt \
/path/nibabies/nibabies_25.0.0.sif /data /out participant --participant-label ${SUB} \
--derivatives /bibsnet \
--fs-license-file /opt/freesurfer/license.txt \
--cifti-output 91k \
--omp-nthreads 8 \
--nprocs 8 \
--project-goodvoxels \
--surface-recon-method mcribs \
--fd-radius 45 \
--age-months ${MONTHS} \
--multi-step-reg \
--norm-csf \
-vv \
-w /work \
--output-spaces MNI152NLin6Asym:res-2

What version of NiBabies are you using?

25.0.0

Relevant log output

Cmdline:
	N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /work/nibabies_25_0_wf/single_subject_sub-0006_ses-MENORDIC_wf/infant_anat_fit_wf/mcribs_surface_recon_wf/t2w_las/reoriented.nii.gz --mask-image /work/nibabies_25_0_wf/single_subject_sub-0006_ses-MENORDIC_wf/infant_anat_fit_wf/mcribs_surface_recon_wf/mask_las/reoriented.nii.gz --convergence [ 50x50x50x50x50, 1e-07 ] --output [ reoriented_corrected.nii.gz, reoriented_bias.nii.gz ] -r --shrink-factor 4
Stdout:

Stderr:
	terminate called after throwing an instance of 'itk::ExceptionObject'
	  what():  /opt/conda/envs/nibabies/include/ITK-5.4/itkImageSink.hxx:239:
	ITK ERROR: LabelStatisticsImageFilter(0x5646dbda69f0): Inputs do not occupy the same physical space! 
	InputImage Origin: [-8.3953156e+01, 1.2150912e+02, -1.2113854e+02], InputImagePrimary Origin: [-8.3953148e+01, 1.2150912e+02, -1.2113854e+02]
		Tolerance: 8.0000007e-07

	Aborted

Add any additional information or context about the problem here.

No response