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Pull requests: nextflow-io/nextflow

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Pull requests list

Simplify process entry execution
#6391 opened Sep 9, 2025 by bentsherman Loading…
chore: bump gradle to 9.0.0
#6388 opened Sep 6, 2025 by chenrui333 Loading…
3
Implement Process Entry Execution with Command-Line Parameter Mapping
#6381 opened Sep 4, 2025 by pditommaso Loading…
13
WIP: First attempt at auth0 flow for nextflow auth login
#6380 opened Sep 4, 2025 by ewels • Draft
1
Update core plugins to use Nextflow Gradle plugin
#6379 opened Sep 3, 2025 by bentsherman Loading…
3
Fix false error for executor.jobName config option lang/config
#6375 opened Sep 2, 2025 by bentsherman • Draft
1
2
Limit S3 client connections when using virtual threads storage/aws
#6369 opened Aug 28, 2025 by jorgee • Draft
2 tasks
25.10
1
10
Typed processes lang/processes
#6368 opened Aug 27, 2025 by bentsherman Loading…
3 tasks done
25.10
42
Support running nextflow script in cygwin software/bash
#6367 opened Aug 27, 2025 by markwoon Loading…
5
Fix unstage controls in command.run when using storeDir software/bash
#6364 opened Aug 26, 2025 by jorgee Loading…
1
6
Generate plugin index file
#6361 opened Aug 22, 2025 by bentsherman • Draft
3
Use Managed Identities with Azure to download and upload files executor/azure-batch
#6344 opened Aug 14, 2025 by adamrtalbot Loading…
1
Package directive
#6342 opened Aug 14, 2025 by edmundmiller • Draft
1
@edmundmiller
8
WIP: Capture all comments in parser
#6332 opened Aug 7, 2025 by ErikDanielsson • Draft
2
Add s3 checksum algorithm storage/aws
#6321 opened Jul 31, 2025 by jorgee • Draft 25.10
1
Use ECS properties instead of container properties executor/aws-batch
#6270 opened Jul 11, 2025 by jorgee Loading…
1
17
Prevent using Azure Low Priority VMs when using Batch Managed mode
#6267 opened Jul 10, 2025 by adamrtalbot • Draft
1
@adamrtalbot
5
Update nf-build-plugin gradle plugin to AWS SDK V2
#6264 opened Jul 10, 2025 by jorgee • Draft
3
Include support for git-remote-s3
#6260 opened Jul 9, 2025 by jorgee • Draft
1 of 5 tasks
1
Ignore secrets in stub run
#6256 opened Jul 7, 2025 by bentsherman • Draft
1
1
Add SQLite based cache store
#6255 opened Jul 6, 2025 by pditommaso • Draft
1
4
Improve AWS Batch spot reclamation error messages
#6253 opened Jul 4, 2025 by ewels Loading…
4 tasks
2
1
Fix plugin secrets in config docs lang/config secrets
#6249 opened Jul 3, 2025 by bentsherman Loading… 25.10
3
14
Sched core implementation
#6242 opened Jul 2, 2025 by pditommaso • Draft
2
Upgrade to Groovy 5
#6220 opened Jun 25, 2025 by bentsherman • Draft
1
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