Skip to content

Blog - line plot #23

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 5 commits into
base: gh-pages
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
105 changes: 105 additions & 0 deletions _posts/2018-08-15-altair-to-mpl-line.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,105 @@
---
layout: post
title: "Making a Line Plot"
date: 2018-08-15 15:30:00 -0500
author: "Kimberly Orr", "Nabarun Pal"
categories: user-guide
tags: "intro about line"
excerpt_separator: <!--read more-->
---

# Making a Line Plot
Altair works best with [long-form](https://altair-viz.github.io/user_guide/data.html#long-form-vs-wide-form-data) data. This is where each row contains a single observation along with all of its metadata stored as values.

Matplotlib works a little better with wide-form data.

Since mpl-altair converts from Altair to Matplotlib, let's look at how to create a line plot using Altair, Matplotlib, and mpl-altair with the following long-form data.

```python
import pandas as pd
df = pd.DataFrame({
'set': [1, 2, 1, 2, 1, 2, 1, 2],
'amount': [1, 4, 5, 3, 1, 7, 2, 9],
'location': ['a', 'a', 'b', 'b', 'c', 'c', 'd', 'd']
})
```

**set** | **amount** | **location**
:---: | :---: | :---:
1 | 1 | a
2 | 4 | a
1 | 5 | b
2 | 3 | b
1 | 1 | c
2 | 7 | c
1 | 2 | d
2 | 9 | d

A possible scenario for this dataset would be an experiment being run in several different locations with 2 measurements taken at each location. The goal of the visualization being to visualize how the amount changed between the two sets of measurements at each location.

## Altair
If we want to plot lines to show how each location changed between set one and set two,
we need to
1. specify the data: `alt.chart(df)`
2. tell Altair to plot lines with `.mark_line()`
3. link the encoding channels:
- x with 'set'
- y with 'amount'
- color with 'location'.
```python
import altair as alt
alt.Chart(df).mark_line().encode(
alt.X('set'),
alt.Y('amount'),
alt.Color('location')
)
```
![png](pics/altair-to-mpl-line_0.png)

## Matplotlib
In Matplotlib, just like with a [categorical scatter plot]({{ site.baseurl }}{% link _posts/2018-08-15-altair-to-mpl-scatter-part2.md %}), we have to plot a new line for every location.
Specifying a label for each line allows us to generate a legend with `ax.legend()`.
```python
import matplotlib.pyplot as plt
fig, ax = plt.subplots()
for loc, subset in df.groupby('location'):
ax.plot('set', 'amount', data=subset, label=loc)
ax.set_xlabel('set')
ax.set_ylabel('amount')
ax.legend(title='location')
plt.grid()
plt.show()
```
![png](pics/altair-to-mpl-line_1.png)

## mpl-altair
To render the Altair chart using Matplotlib:
```python
import altair as alt
import matplotlib.pyplot as plt
import mplaltair
chart = alt.Chart(df).mark_line().encode(
alt.X('set'),
alt.Y('amount'),
alt.Color('location')
)
fig, ax = mplaltair.convert(chart)
plt.show()
```
![png](pics/altair-to-mpl-line_2.png)

Since the Altair chart has been converted to Matplotlib objects, it's now possible to modify the chart using Matplotlib:
```python
import altair as alt
import matplotlib.pyplot as plt
import mplaltair
chart = alt.Chart(df).mark_line().encode(
alt.X('set'),
alt.Y('amount'),
alt.Color('location')
)
fig, ax = mplaltair.convert(chart)
ax.set_xlabel('set')
ax.set_ylabel('amount')
plt.show()
```
Binary file added _posts/pics/altair-to-mpl-line_0.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _posts/pics/altair-to-mpl-line_1.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _posts/pics/altair-to-mpl-line_2.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.