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@deflaux deflaux commented Dec 16, 2015

  • Fixes Refactor pipeline options. #114
  • Other minor but related cleanup including:
    • simplified OutputDatasetId for CalculateCoverage pipeline
    • got rid of now obsolete non-gRPC version of JoinNonVariantSegmentsWithVariants
    • fixed all code with warning "local variable definition hides another field or variable"

Also confirmed that integration tests pass.

Also remove obsolete version of JoinNonVariantSegmentsWithVariants.
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deflaux commented Dec 16, 2015

@dloy PTAL

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nit: might be nice to just put the command line here.

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dionloy commented Dec 17, 2015

LGTM

deflaux added a commit that referenced this pull request Dec 17, 2015
@deflaux deflaux merged commit a5f50b4 into googlegenomics:master Dec 17, 2015
jiridanek pushed a commit to jiridanek/dataflow-java that referenced this pull request Jan 18, 2016
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Refactor pipeline options.

3 participants