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Dependency cleanup #1372

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Dependency cleanup #1372

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66e6b07
dependency cleanup attempt
melange396 Jan 18, 2024
4a06e7e
replace requirement of xlrd and annotate where its needed
melange396 Jan 26, 2024
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6 changes: 1 addition & 5 deletions requirements.api.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,19 +2,15 @@ delphi_utils==0.3.15
epiweeks==2.1.2
Flask==2.2.5
Flask-Limiter==3.3.0
jinja2==3.1.3
more_itertools==8.4.0
mysqlclient==2.1.1
numpy==1.22.4
orjson==3.4.7
pandas==1.2.3
python-dotenv==0.15.0
pyyaml
redis==3.5.3
requests==2.31.0
scipy==1.10.0
sentry-sdk[flask]
SQLAlchemy==1.4.40
structlog==22.1.0
tenacity==7.0.0
typing-extensions
werkzeug==2.3.8
8 changes: 2 additions & 6 deletions requirements.dev.txt
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Expand Up @@ -2,22 +2,18 @@ aiohttp==3.9.0
black>=20.8b1
bump2version==1.0.1
covidcast==0.1.5
delphi_utils==0.3.15
docker==6.0.1
dropbox==11.36.0
freezegun==1.2.2
invoke>=1.4.1
lxml==4.9.1
matplotlib==3.6.2
more_itertools==8.4.0
mypy>=0.790
mysql-connector==2.2.9
numpy==1.22.4
pycountry==22.3.5
pymysql==1.0.2
pytest==7.2.0
pytest-check==1.3.0
sas7bdat==2.2.3
requests==2.31.0
selenium==4.7.2
sqlalchemy-stubs>=0.3
tenacity==7.0.0
xlrd==2.0.1
1 change: 1 addition & 0 deletions src/acquisition/quidel/quidel.py
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Expand Up @@ -201,6 +201,7 @@ def prepare_csv(self):
print("End date not found in file name:" + f)
end_date = None

# NOTE: this pd.read_excel() method requires installation of the `xlrd` library:
df_dict = pd.read_excel(join(self.excel_uptodate_path, f + ".xlsx"), sheet_name=None)
for (_, df) in df_dict.items():
df = df.dropna(axis=0, how="all")
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