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Refactor claims_hosp to use new geomapper functions #322

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Merged
merged 5 commits into from
Oct 20, 2020
Merged

Refactor claims_hosp to use new geomapper functions #322

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06e4b12
replace deprecated functions
chinandrew Oct 16, 2020
f6e7b78
Remove uppercase
chinandrew Oct 16, 2020
a164e25
Remove print
chinandrew Oct 16, 2020
021cbb4
Remove zips static file
chinandrew Oct 16, 2020
707535e
Fix argument
chinandrew Oct 17, 2020
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19 changes: 13 additions & 6 deletions claims_hosp/delphi_claims_hosp/update_indicator.py
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Original file line number Diff line number Diff line change
Expand Up @@ -96,13 +96,21 @@ def geo_reindex(self, data):
"""
geo_map = GeoMapper()
if self.geo == "county":
data_frame = geo_map.county_to_megacounty(
data, Config.MIN_DEN, Config.MAX_BACKWARDS_PAD_LENGTH,
thr_col="den", mega_col=self.geo)
data_frame = geo_map.fips_to_megacounty(data,
Config.MIN_DEN,
Config.MAX_BACKWARDS_PAD_LENGTH,
thr_col="den",
mega_col=self.geo)
elif self.geo == "state":
data_frame = geo_map.county_to_state(data, state_id_col=self.geo)
data_frame = geo_map.replace_geocode(data,
from_code="fips",
new_col=self.geo,
new_code="state_id")
data_frame[self.geo] = data_frame[self.geo]
elif self.geo == "msa":
data_frame = geo_map.county_to_msa(data, msa_col=self.geo)
data_frame = geo_map.replace_geocode(data,
from_code="fips",
new_code=self.geo)
elif self.geo == "hrr":
data_frame = data # data is already adjusted in aggregation step above
else:
Expand All @@ -119,7 +127,6 @@ def geo_reindex(self, data):
assert (
len(multiindex) <= (GeoConstants.MAX_GEO[self.geo] * len(self.fit_dates))
), "more loc-date pairs than maximum number of geographies x number of dates"

# fill dataframe with missing dates using 0
data_frame = data_frame.reindex(multiindex, fill_value=0)
data_frame.fillna(0, inplace=True)
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