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The nrepl buffer disappears after a cider-restart or even a cider-quit followed by a cider-jack-in. Very annoying, and the only solution (that I can discern) is to quit emacs and restart.
This problem has been happening for a while, and is definitely still happening with 0.8.2-SNAPSHOT.
Issue #818 details another problem with the nrepl buffer not scrolling -a desireable enhancement.