Deps update

docs/Makefile

@@ -96,6 +96,18 @@ publish:
 	git checkout @{-1}
 	git stash pop
 
+publish-release: publish
+	make clean
+	git stash
+	git checkout main
+	make html
+	-git add -f "$(BUILDDIR)"
+	-git commit -m "Latest docs build." "$(BUILDDIR)"
+	git push origin main -f
+	make clean
+	git checkout @{-1}
+	git stash pop
+
 apidocs: build-dir
 	sphinx-apidoc -f -T -o classes ../spatialpy
 

requirements.txt

@@ -1,4 +1,3 @@
-pygmsh>=5.0.2
-meshio>=2.3.10
+meshio>=5.3.2
 scipy>=1.4.1
 plotly>=4.1.0

spatialpy/core/domain.py

@@ -715,11 +715,13 @@ def import_meshio_object(cls, mesh_obj):
         #vertices
         obj.vertices = mesh_obj.points
         # triangles
-        if 'triangle' in mesh_obj.cells:
-            obj.triangles = mesh_obj.cells['triangle']
+        triangles = list(filter(lambda cell: cell.type == "triangle", mesh_obj.cells))
+        if triangles:
+            obj.triangles = triangles[0].data
         #tetrahedrons
-        if 'tetra' in mesh_obj.cells:
-            obj.tetrahedrons = mesh_obj.cells['tetra']
+        tetras = list(filter(lambda cell: cell.type == "tetra", mesh_obj.cells))
+        if tetras:
+            obj.tetrahedrons = tetras[0].data
         # volume
         obj.calculate_vol()
         if not numpy.count_nonzero(obj.vol):
@@ -742,16 +744,12 @@ def read_msh_file(cls, filename):
         :returns: SpatialPy Domain object created from the mesh file.
         :rtype: spatialpy.Domain.Domain
         """
-        try:
-            import pygmsh # pylint: disable=import-outside-toplevel
-        except ImportError as err:
-            raise DomainError("The python package 'pygmsh' is not installed.") from err
         try:
             import meshio # pylint: disable=import-outside-toplevel
         except ImportError as err:
             raise DomainError("The python package 'meshio' is not installed.") from err
 
-        return cls.import_meshio_object(meshio.msh_io.read(filename))
+        return cls.import_meshio_object(meshio.read(filename))
 
     def read_stochss_subdomain_file(self, filename, type_ids=None):
         """