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Fix broken link in vista3d and modify import section in vista2d #1837

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Merged
KumoLiu merged 2 commits into from
Sep 23, 2024
Merged

Fix broken link in vista3d and modify import section in vista2d #1837

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bb55a0c
fix broken link
KumoLiu Sep 23, 2024
cd430ed
minor fix
KumoLiu Sep 23, 2024
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7 changes: 1 addition & 6 deletions vista_2d/vista_2d_tutorial_monai.ipynb
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Expand Up @@ -53,18 +53,13 @@
"metadata": {},
"outputs": [],
"source": [
"!python -c \"import monai\" || pip install -q monai\n",
"!python -c \"import fire\" || pip install -q fire\n",
"!python -c \"import tifffile\" || pip install -q tifffile\n",
"!python -c \"import imagecodecs\" || pip install -q imagecodecs\n",
"!python -c \"import PIL\" || pip install -q pillow\n",
"!python -c \"import monai\" || pip install -q \"monai-weekly[fire, tifffile, imagecodecs, pillow, tqdm]\"\n",
"!python -c \"import fastremap\" || pip install -q fastremap\n",
"!python -c \"import cellpose\" || pip install -q cellpose\n",
"!python -c \"import natsort\" || pip install -q natsort\n",
"!python -c \"import roifile\" || pip install -q roifile\n",
"!python -c \"import ipykernel\" || pip install -q ipykernel\n",
"!python -c \"import cv2\" || pip install -q opencv-python-headless\n",
"!python -c \"import tqdm\" || pip install -q tqdm\n",
"!python -c \"import numba\" || pip install -q numba\n",
"!python -c \"import segment_anything\" || pip install -q git+https://github.com/facebookresearch/segment-anything.git\n",
"%matplotlib inline"
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2 changes: 1 addition & 1 deletion vista_3d/vista3d_spleen_finetune.ipynb
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Expand Up @@ -32,7 +32,7 @@
"\n",
"The Spleen dataset can be downloaded from http://medicaldecathlon.com/.\n",
"\n",
"![spleen](../../figures/spleen0.png)\n",
"![spleen](../figures/spleen0.png)\n",
"\n",
"Target: Spleen \n",
"Modality: CT \n",
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