Nds adding developer docs

deploy/helm/.helmignore

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+# Patterns to ignore when building packages.
+# This supports shell glob matching, relative path matching, and
+# negation (prefixed with !). Only one pattern per line.
+.DS_Store
+# Common VCS dirs
+.git/
+.gitignore
+.bzr/
+.bzrignore
+.hg/
+.hgignore
+.svn/
+# Common backup files
+*.swp
+*.bak
+*.tmp
+*.orig
+*~
+# Various IDEs
+.project
+.idea/
+*.tmproj
+.vscode/

deploy/helm/Chart.yaml

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+apiVersion: v2
+name: monai
+description: A Helm chart for Kubernetes
+
+# A chart can be either an 'application' or a 'library' chart.
+#
+# Application charts are a collection of templates that can be packaged into versioned archives
+# to be deployed.
+#
+# Library charts provide useful utilities or functions for the chart developer. They're included as
+# a dependency of application charts to inject those utilities and functions into the rendering
+# pipeline. Library charts do not define any templates and therefore cannot be deployed.
+type: application
+
+# This is the chart version. This version number should be incremented each time you make changes
+# to the chart and its templates, including the app version.
+# Versions are expected to follow Semantic Versioning (https://semver.org/)
+version: 0.1.0
+
+# This is the version number of the application being deployed. This version number should be
+# incremented each time you make changes to the application. Versions are not expected to
+# follow Semantic Versioning. They should reflect the version the application is using.
+# It is recommended to use it with quotes.
+appVersion: "1.16.0"

deploy/helm/Gateway.yaml

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+replicaCount: 1
+
+image:
+  repository: 847264867502.dkr.ecr.eu-west-2.amazonaws.com/monai-deploy-informatics-gateway-dev
+  pullPolicy: IfNotPresent
+  tag: latest
+
+enviromentVariables:
+  InformaticsGateway__messaging__publisherSettings__endpoint: "rabbitmq-monai"
+  InformaticsGateway__messaging__publisherSettings__username: "admin"
+  InformaticsGateway__messaging__publisherSettings__password: "admin"
+  InformaticsGateway__messaging__subscriberSettings__endpoint: "rabbitmq-monai"
+  InformaticsGateway__messaging__subscriberSettings__username: "admin"
+  InformaticsGateway__messaging__subscriberSettings__password: "admin"
+  InformaticsGateway__storage__settings__endpoint: "minio:9000" 
+  InformaticsGateway__storage__settings__accessKey: "minioadmin"
+  InformaticsGateway__storage__settings__accessToken: "minioadmin"
+
+service:
+  type: ClusterIP
+  port: 5000
+

deploy/helm/MWM.yaml

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+replicaCount: 1
+
+image:
+  repository: registry.gitlab.com/answerdigital/londonai/aide/workflow-manager-images/workflow-manager
+  pullPolicy: IfNotPresent
+  tag: 2022-07-25
+
+imagePullSecrets:
+ - name: gitlab-image-pull
+
+enviromentVariables:
+  WorkflowManager__storage__settings__endpoint: "minio:9000"
+ # WorkflowManager__messaging__publisherSettings__endpoint: "rabbitmq"
+ # WorkflowManager__messaging__subscriberSettings__endpoint: "rabbitmq"
+  WorkflowManager__messaging__publisherSettings__endpoint: "rabbit-monai"
+  WorkflowManager__messaging__subscriberSettings__endpoint: "rabbit-monai"
+  WorkloadManagerDatabase__ConnectionString: "mongodb://root:rootpassword@mongo-service-monai:27017"
+
+service:
+  type: ClusterIP
+  port: 5000
+
+
+
+
+

deploy/helm/argo.yaml

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+
+replicaCount: 1
+
+
+service:
+  type: NodePort
+  port: 2746
+  nodeport: 30046
+  selector: 
+    app: argo-server
+
+
+
+

deploy/helm/holiday-api.yaml

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+# Default values for deploy.
+# This is a YAML-formatted file.
+# Declare variables to be passed into your templates.
+
+replicaCount: 1
+
+image:
+  repository: 638262335746.dkr.ecr.eu-west-1.amazonaws.com/holiday-api
+  pullPolicy: IfNotPresent
+  tag: #{IMAGE_TAG}#
+
+
+imagePullSecrets: 
+ - name: regcred
+
+nameOverride: ""
+fullnameOverride: ""
+
+serviceAccount:
+  create: false
+
+service:
+  type: ClusterIP
+  port: 5000
+
+
+enviromentVariables:
+  ASPNETCORE_ENVIRONMENT: #{ASPENVIRONMENT}#
+  ASPNETCORE_URLS: "http://::5000"
+  MongoDbSettings__ConnectionString: "mongodb://mongo-holiday:27017"
+  MongoDbSettings__DatabaseName: #{MONGODB_NAME}#
+  Hangfire__ConnectionString: "mongodb://mongo-holiday:27017"
+  Hangfire__DatabaseName: #{HANGFIREDB_NAME}# 
+
+probes:
+ # enabled: true
+
+ingress:
+  enabled: true
+  className: ""
+  annotations: {}
+  serviceName: #{APISERVICE_NAME}#
+  annotations:
+    kubernetes.io/ingress.class: nginx
+    nginx.ingress.kubernetes.io/enable-cors: "true"
+  hosts:
+    - host: #{APIHOST_NAME}#
+      paths:
+        - path: /
+          pathType: Prefix
+  tls: []
+
+autoscaling:
+  enabled: false
+
+
+nodeSelector: {}
+
+tolerations: []
+
+affinity: {}

deploy/helm/minio.yaml

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+# Default values for deploy.
+# This is a YAML-formatted file.
+# Declare variables to be passed into your templates.
+
+replicaCount: 1
+
+# image:
+  # repository: minio/minio
+  # pullPolicy: IfNotPresent
+  # tag: latest
+  # command: 
+    # - "/bin/sh"
+    # - "-ce"
+    # - "/usr/bin/docker-entrypoint.sh minio server /data"
+
+enviromentVariables:
+  MINIO_ROOT_USER: minioadmin
+  MINIO_ROOT_PASSWORD: minioadmin
+  WorkflowManager__storage__settings__endpoint: "minio:9000"
+
+service:
+  type: NodePort
+  port: 9000
+  nodeport: 30090
+  port2: 9001
+  nodeport2: 30091
+  selector: 
+    app: minio
+
+
+
+

deploy/helm/mongo-local.yaml

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+
+replicaCount: 1
+
+image:
+  repository: mongo
+  pullPolicy: IfNotPresent
+  # Overrides the image tag whose default is the chart appVersion.
+  tag: "5.0"
+
+enviromentVariables:
+  MONGO_INITDB_ROOT_USERNAME: root
+  MONGO_INITDB_ROOT_PASSWORD: rootpassword
+
+service:
+  type: NodePort
+  port: 27017
+  nodeport: 30017
+
+
+affinity: {}

deploy/helm/mongo-serviceOnly.yaml

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+replicaCount: 1
+
+
+
+service:
+  type: NodePort
+  port: 27017
+  nodeport: 30017
+  selector: 
+    app.kubernetes.io/instance: mongo
+    app.kubernetes.io/name: monai
+
+
+affinity: {}

deploy/helm/mongo.yaml

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+# Default values for deploy.
+# This is a YAML-formatted file.
+# Declare variables to be passed into your templates.
+
+replicaCount: 1
+
+image:
+  repository: mongo
+  pullPolicy: IfNotPresent
+  # Overrides the image tag whose default is the chart appVersion.
+  tag: "5.0"
+
+enviromentVariables:
+  MONGO_INITDB_ROOT_USERNAME: root
+  MONGO_INITDB_ROOT_PASSWORD: rootpassword
+
+service:
+  type: ClusterIP
+  port: 27017
+
+volumes:
+  name: mongo-storage
+  claimName: mongo-storage-claim
+  namespace: monai
+  storage: 5Gi
+  path: /var/local/mongodata  # path on the host
+
+volumeMounts:
+  mountPath: "/data/db"
+  name: mongo-storage
+
+
+affinity: {}

deploy/helm/postgres.yaml

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+# Default values for deploy.
+# This is a YAML-formatted file.
+# Declare variables to be passed into your templates.
+
+replicaCount: 1
+
+image:
+  repository: progress
+  pullPolicy: IfNotPresent
+  tag: latest
+
+service:
+  type: ClusterIP
+  port: 80
+
+enviromentVariables:
+  POSTGRES_PASSWORD: mysecretpassword
+

deploy/helm/rabbitmq.yaml

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+replicaCount: 1
+
+image:
+  repository: rabbitmq
+  pullPolicy: IfNotPresent
+  tag: 3.8.18-management
+
+enviromentVariables:
+  RABBITMQ_ERLANG_COOKIE: "SWQOKODSQALRPCLNMEQG"
+  RABBITMQ_DEFAULT_USER: "admin"
+  RABBITMQ_DEFAULT_PASS: "admin"
+  RABBITMQ_DEFAULT_VHOST: "monaideploy"
+
+
+service:
+  type: NodePort
+  port: 5672
+  nodeport: 30072
+  port2: 15672
+  nodeport2: 30672
+
+
+

deploy/helm/templates/NOTES.txt

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+1. Get the application URL by running these commands:
+{{- if ((.Values.ingress).enabled) }}
+{{- range $host := .Values.ingress.hosts }}
+  {{- range .paths }}
+  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ $host.host }}{{ .path }}
+  {{- end }}
+{{- end }}
+{{- else if contains "NodePort" .Values.service.type }}
+  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "deploy.fullname" . }})
+  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
+  echo http://$NODE_IP:$NODE_PORT
+{{- else if contains "LoadBalancer" .Values.service.type }}
+     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
+           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "deploy.fullname" . }}'
+  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "deploy.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
+  echo http://$SERVICE_IP:{{ .Values.service.port }}
+{{- else if contains "ClusterIP" .Values.service.type }}
+  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "deploy.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
+  export CONTAINER_PORT=$(kubectl get pod --namespace {{ .Release.Namespace }} $POD_NAME -o jsonpath="{.spec.containers[0].ports[0].containerPort}")
+  echo "Visit http://127.0.0.1:8080 to use your application"
+  kubectl --namespace {{ .Release.Namespace }} port-forward $POD_NAME 8080:$CONTAINER_PORT
+{{- end }}