Test of Cairo fails on v 0.7 - no method matching validate_cairo_version

[colbec]

After the edits to build.jl suggested by @eielsen in #185

julia> versioninfo()
Julia Version 0.7.0-DEV.26
Commit 9beece6e99 (2017-05-04 22:45 UTC)
Platform Info:
  OS: Linux (x86_64-suse-linux)
  CPU: Intel(R) Core(TM) i5-4460  CPU @ 3.20GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell)
  LAPACK: libopenblas64_
  LIBM: libopenlibm
  LLVM: libLLVM-3.9.1 (ORCJIT, haswell)

Cairo builds but test fails with:

julia> Pkg.build("Cairo")
INFO: Building Cairo

julia> Pkg.test("Cairo")
INFO: Computing test dependencies for Cairo...
INFO: Installing BaseTestNext v0.2.2
INFO: Testing Cairo

(process:11714): GLib-GObject-CRITICAL **: /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()

(process:11714): GLib-CRITICAL **: g_once_init_leave: assertion `result != 0' failed

(process:11714): GLib-GObject-CRITICAL **: /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()

(process:11714): GLib-CRITICAL **: g_once_init_leave: assertion `result != 0' failed

(process:11714): GLib-GObject-CRITICAL **: /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()

(process:11714): GLib-GObject-CRITICAL **: /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()

and the test process hangs and only stops with Ctrl+c.

julia> using BinDeps; BinDeps.debug("Cairo")
INFO: Reading build script...
The package declares 1 dependencies.
 - Library Group "cairo"ERROR: MethodError: no method matching validate_cairo_version(::String, ::Ptr{Void})
The applicable method may be too new: running in world age 21786, while current world is 21792.
Closest candidates are:
  validate_cairo_version(::Any, ::Any) at /home/colin/.julia/v0.7/Cairo/deps/build.jl:9 (method too new to be called from this world context.)
Stacktrace:
 [1] #_find_library#50(::Type{T} where T, ::Function, ::BinDeps.LibraryDependency) at /home/colin/.julia/v0.7/BinDeps/src/dependencies.jl:522
 [2] next(::Base.Generator{Array{BinDeps.LibraryDependency,1},BinDeps.##53#54}, ::Int64) at ./generator.jl:45
 [3] collect_to!(::Array{Tuple{BinDeps.LibraryDependency,Array{Any,1}},1}, ::Base.Generator{Array{BinDeps.LibraryDependency,1},BinDeps.##53#54}, ::Int64, ::Int64) at ./array.jl:462
 [4] collect(::Base.Generator{Array{BinDeps.LibraryDependency,1},BinDeps.##53#54}) at ./array.jl:430
 [5] allf at /home/colin/.julia/v0.7/BinDeps/src/dependencies.jl:665 [inlined]
 [6] show(::Base.TTY, ::BinDeps.LibraryGroup) at /home/colin/.julia/v0.7/BinDeps/src/debug.jl:32
 [7] debug(::Base.TTY, ::String) at /home/colin/.julia/v0.7/BinDeps/src/debug.jl:62
 [8] debug(::String) at /home/colin/.julia/v0.7/BinDeps/src/debug.jl:65

[lobingera]

Sigh

[lobingera]

I've seen something similar very early in experiments with julia (~2013) which was a mismatch between different versions of one library loaded by different BinDeps build scripts. Just to confirm, close julia, start and do Pkg.test("Cairo") as the first. And please list Pkg.status()

[colbec]

julia7
               _
   _       _ _(_)_     |  A fresh approach to technical computing
  (_)     | (_) (_)    |  Documentation: https://docs.julialang.org
   _ _   _| |_  __ _   |  Type "?help" for help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 0.7.0-DEV.26 (2017-05-04 22:45 UTC)
 _/ |\__'_|_|_|\__'_|  |  Commit 9beece6e99 (0 days old master)
|__/                   |  x86_64-suse-linux

julia> Pkg.test("Cairo")
INFO: Computing test dependencies for Cairo...
INFO: Installing BaseTestNext v0.2.2
INFO: Testing Cairo

(process:14598): GLib-GObject-CRITICAL **: /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()

(process:14598): GLib-CRITICAL **: g_once_init_leave: assertion `result != 0' failed

(process:14598): GLib-GObject-CRITICAL **: /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()

(process:14598): GLib-CRITICAL **: g_once_init_leave: assertion `result != 0' failed

(process:14598): GLib-GObject-CRITICAL **: /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()

(process:14598): GLib-GObject-CRITICAL **: /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()


^C
signal (2): Interrupt
while loading /home/colin/.julia/v0.7/Cairo/test/runtests.jl, in expression starting on line 15
pthread_cond_wait at /lib64/libpthread.so.0 (unknown line)
g_cond_wait at /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/glib/gthread-posix.c:748
g_once_init_enter at /home/colin/.julia/v0.7/Cairo/deps/src/glib-2.34.3/glib/gthread.c:682
pango_font_map_get_type at /home/colin/.julia/v0.7/Cairo/deps/src/pango-1.32.6/pango/pango-fontmap.c:33
pango_cairo_font_map_get_type at /home/colin/.julia/v0.7/Cairo/deps/src/pango-1.32.6/pango/pangocairo-fontmap.c:40
pango_cairo_fc_font_map_get_type at /home/colin/.julia/v0.7/Cairo/deps/src/pango-1.32.6/pango/pangocairo-fcfontmap.c:83
pango_cairo_font_map_new at /home/colin/.julia/v0.7/Cairo/deps/src/pango-1.32.6/pango/pangocairo-fontmap.c:74
pango_cairo_font_map_get_default at /home/colin/.julia/v0.7/Cairo/deps/src/pango-1.32.6/pango/pangocairo-fontmap.c:154
pango_cairo_create_context at /home/colin/.julia/v0.7/Cairo/deps/src/pango-1.32.6/pango/pangocairo-context.c:419
pango_cairo_create_layout at /home/colin/.julia/v0.7/Cairo/deps/src/pango-1.32.6/pango/pangocairo-context.c:455
Type at /home/colin/.julia/v0.7/Cairo/src/Cairo.jl:442
macro expansion at /home/colin/.julia/v0.7/Cairo/test/runtests.jl:20 [inlined]
macro expansion at ./test.jl:856 [inlined]
anonymous at ./<missing> (unknown line)
jl_call_fptr_internal at /home/colin/Downloads/julia7/src/julia_internal.h:337 [inlined]
jl_call_method_internal at /home/colin/Downloads/julia7/src/julia_internal.h:356 [inlined]
jl_toplevel_eval_flex at /home/colin/Downloads/julia7/src/toplevel.c:587
jl_parse_eval_all at /home/colin/Downloads/julia7/src/ast.c:873
jl_load at /home/colin/Downloads/julia7/src/toplevel.c:614
include_from_node1 at ./loading.jl:552
unknown function (ip: 0x7f2de45bf7db)
jl_call_fptr_internal at /home/colin/Downloads/julia7/src/julia_internal.h:337 [inlined]
jl_call_method_internal at /home/colin/Downloads/julia7/src/julia_internal.h:356 [inlined]
jl_apply_generic at /home/colin/Downloads/julia7/src/gf.c:1930
include at ./sysimg.jl:14
unknown function (ip: 0x7f2de4452b0b)
jl_call_fptr_internal at /home/colin/Downloads/julia7/src/julia_internal.h:337 [inlined]
jl_call_method_internal at /home/colin/Downloads/julia7/src/julia_internal.h:356 [inlined]
jl_apply_generic at /home/colin/Downloads/julia7/src/gf.c:1930
process_options at ./client.jl:305
_start at ./client.jl:371
unknown function (ip: 0x7f2de45cb0c8)
jl_call_fptr_internal at /home/colin/Downloads/julia7/src/julia_internal.h:337 [inlined]
jl_call_method_internal at /home/colin/Downloads/julia7/src/julia_internal.h:356 [inlined]
jl_apply_generic at /home/colin/Downloads/julia7/src/gf.c:1930
jl_apply at /home/colin/Downloads/julia7/ui/../src/julia.h:1422 [inlined]
true_main at /home/colin/Downloads/julia7/ui/repl.c:127
main at /home/colin/Downloads/julia7/ui/repl.c:264
__libc_start_main at /lib64/libc.so.6 (unknown line)
unknown function (ip: 0x401738)
unknown function (ip: 0xffffffffffffffff)
Allocations: 1861298 (Pool: 1859955; Big: 1343); GC: 1
================================[ ERROR: Cairo ]================================

InterruptException:

================================================================================
INFO: Removing BaseTestNext v0.2.2
ERROR: Cairo had test errors

julia> Pkg.status()
5 required packages:
 - CUDAnative                    0.2.0
 - Cairo                         0.3.0              63352a59 (dirty)
 - DataFrames                    0.9.1
 - Images                        0.9.1
 - PyPlot                        2.3.1
55 additional packages:
 - AxisAlgorithms                0.1.6
 - AxisArrays                    0.1.2
 - BinDeps                       0.4.7
 - CUDAdrv                       0.3.0
 - Calculus                      0.2.2
 - CatIndices                    0.0.2
 - ColorTypes                    0.4.1
 - ColorVectorSpace              0.4.2
 - Colors                        0.7.3
 - Compat                        0.24.0
 - ComputationalResources        0.0.2
 - Conda                         0.5.3
 - CoordinateTransformations     0.4.1
 - CustomUnitRanges              0.0.4
 - DataArrays                    0.5.0
 - DataStructures                0.5.3
 - DualNumbers                   0.3.0
 - FFTViews                      0.0.2
 - FileIO                        0.3.1
 - FixedPointNumbers             0.3.7
 - GZip                          0.3.0
 - Graphics                      0.2.0
 - ImageAxes                     0.2.1
 - ImageCore                     0.3.0
 - ImageFiltering                0.1.4
 - ImageMetadata                 0.2.3
 - ImageTransformations          0.2.2
 - IndirectArrays                0.1.1
 - Interpolations                0.6.1
 - IntervalSets                  0.0.5
 - Iterators                     0.3.1
 - JSON                          0.10.0
 - LLVM                          0.3.3
 - LaTeXStrings                  0.2.1
 - MacroTools                    0.3.6
 - MappedArrays                  0.0.7
 - NaNMath                       0.2.4
 - OffsetArrays                  0.3.0
 - PyCall                        1.12.0
 - RangeArrays                   0.1.2
 - Ratios                        0.0.4
 - Reexport                      0.0.3
 - Rotations                     0.5.0
 - SHA                           0.3.2
 - SIUnits                       0.1.0
 - ShowItLikeYouBuildIt          0.0.1
 - SimpleTraits                  0.5.0
 - SortingAlgorithms             0.1.1
 - SpecialFunctions              0.1.1
 - StaticArrays                  0.5.0
 - StatsBase                     0.14.1
 - TexExtensions                 0.0.3
 - TiledIteration                0.0.2
 - URIParser                     0.1.8
 - WoodburyMatrices              0.2.2

[lobingera]

Thanks for your info in JuliaPackaging/BinDeps.jl#281 (comment)

The last thing you could check now is, what BinDeps creates in deps.jl i.e.

shell> cat ~/.julia/v0.5/Cairo/deps/deps.jl
# This is an auto-generated file; do not edit

# Pre-hooks

# Macro to load a library
macro checked_lib(libname, path)
    ((VERSION >= v"0.4.0-dev+3844" ? Base.Libdl.dlopen_e : Base.dlopen_e)(path) == C_NULL) && error("Unable to load \n\n$libname ($path)\n\nPlease re-run Pkg.build(package), and restart Julia.")
    quote const $(esc(libname)) = $path end
end

# Load dependencies
@checked_lib _jl_libgobject "/usr/lib/x86_64-linux-gnu/libgobject-2.0.so"
@checked_lib _jl_libpango "/usr/lib/x86_64-linux-gnu/libpango-1.0.so"
@checked_lib _jl_libpangocairo "/usr/lib/x86_64-linux-gnu/libpangocairo-1.0.so"
@checked_lib _jl_libcairo "/usr/lib/x86_64-linux-gnu/libcairo.so"

# Load-hooks

[colbec]

> cat .julia/v0.7/Cairo/deps/deps.jl 
# This is an auto-generated file; do not edit

# Pre-hooks

# Macro to load a library
macro checked_lib(libname, path)
    ((VERSION >= v"0.4.0-dev+3844" ? Base.Libdl.dlopen_e : Base.dlopen_e)(path) == C_NULL) && error("Unable to load \n\n$libname ($path)\n\nPlease re-run Pkg.build(package), and restart Julia.")
    quote const $(esc(libname)) = $path end
end

# Load dependencies
@checked_lib _jl_libgobject "/home/colin/.julia/v0.7/Cairo/deps/usr/lib64/libgobject-2.0.so"
@checked_lib _jl_libcairo "/home/colin/.julia/v0.7/Cairo/deps/usr/lib64/libcairo.so"
@checked_lib _jl_libpango "/home/colin/.julia/v0.7/Cairo/deps/usr/lib64/libpango-1.0.so"
@checked_lib _jl_libpangocairo "/home/colin/.julia/v0.7/Cairo/deps/usr/lib64/libpangocairo-1.0.so"

# Load-hooks

[lobingera]

1. To me it looks like BinDeps decided to let the 4 libraries built locally (/home/colin/.julia/v0.7/Cairo/deps/usr/ etc.) while the system libraries seem to be available.

2. from the trace i see something in pangocairo happens, might be a missing font, might be some other dependency which causes the infinite wait.

3. In a similar situation i hardcoded the path to the 4 libs in Cairo/deps/deps.jl, in your case this would be replacing the local installations with

/usr/lib64/libgobject-2.0.so
/usr/lib64/libcairo.so
/usr/lib64/libpango-1.0.so
/usr/lib64/libpangocairo-1.0.so

4. Even, if this works then, you'll have the problem that with every update or Pkg.build call this setting would come back.
5. I'm 90% sure it's a BinDeps issue triggered by the missing gettext while the libraries that will be ccalled are actually system-wide available.

[patrikreiske]

This problem persists and since it's pretty annoying I just wanted to ask if there's any ambition to fix this.

[lobingera]

@patrikreiske Do you have an idea how fix and test this (because i haven't)? btw: what version of julia and linux OS are you running, and could you please copy the fail log here?

[patrikreiske]

Neither have I. Sadly I probably won't have any time to do investigation on this problem.

I'm running openSUSE Tumbleweed from which's repositories I installed Julia.

julia> versioninfo()
Julia Version 0.6.2
Commit d386e40 (2017-12-13 18:08 UTC)
Platform Info:
  OS: Linux (x86_64-suse-linux)
  CPU: Intel(R) Core(TM) i5-3320M CPU @ 2.60GHz
  WORD_SIZE: 64
  BLAS: libopenblas (DYNAMIC_ARCH Sandybridge)
  LAPACK: libopenblas_openmp.so.0
  LIBM: libopenlibm
  LLVM: libLLVM-3.9.1 (ORCJIT, ivybridge)

julia> Pkg.test("Cairo")
INFO: Testing Cairo

(process:19006): GLib-GObject-CRITICAL **: /home/patrik/.julia/v0.6/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()
                                                                                                                                                                                                
(process:19006): GLib-CRITICAL **: g_once_init_leave: assertion `result != 0' failed                                                                                                            
                                                                                                                                                                                                
(process:19006): GLib-GObject-CRITICAL **: /home/patrik/.julia/v0.6/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()                                           
                                                                                                                                                                                                
(process:19006): GLib-CRITICAL **: g_once_init_leave: assertion `result != 0' failed                                                                                                            
                                                                                                                                                                                                
(process:19006): GLib-GObject-CRITICAL **: /home/patrik/.julia/v0.6/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()                                           
                                                                                                                                                                                                
(process:19006): GLib-GObject-CRITICAL **: /home/patrik/.julia/v0.6/Cairo/deps/src/glib-2.34.3/gobject/gtype.c:2720: You forgot to call g_type_init()                                           
^C                                                                                                                                                                                              
signal (2): Interrupt                                                                                                                                                                           
while loading /home/patrik/.julia/v0.6/Cairo/test/runtests.jl, in expression starting on line 11                                                                                                
pthread_cond_wait at /lib64/libpthread.so.0 (unknown line)                                                                                                                                      
g_cond_wait at /home/patrik/.julia/v0.6/Cairo/deps/src/glib-2.34.3/glib/gthread-posix.c:748                                                                                                     
g_once_init_enter at /home/patrik/.julia/v0.6/Cairo/deps/src/glib-2.34.3/glib/gthread.c:682                                                                                                     
pango_font_map_get_type at /home/patrik/.julia/v0.6/Cairo/deps/src/pango-1.32.6/pango/pango-fontmap.c:33                                                                                        
pango_cairo_font_map_get_type at /home/patrik/.julia/v0.6/Cairo/deps/src/pango-1.32.6/pango/pangocairo-fontmap.c:40
pango_cairo_fc_font_map_get_type at /home/patrik/.julia/v0.6/Cairo/deps/src/pango-1.32.6/pango/pangocairo-fcfontmap.c:83
pango_cairo_font_map_new at /home/patrik/.julia/v0.6/Cairo/deps/src/pango-1.32.6/pango/pangocairo-fontmap.c:74
pango_cairo_font_map_get_default at /home/patrik/.julia/v0.6/Cairo/deps/src/pango-1.32.6/pango/pangocairo-fontmap.c:154
pango_cairo_create_context at /home/patrik/.julia/v0.6/Cairo/deps/src/pango-1.32.6/pango/pangocairo-context.c:419
pango_cairo_create_layout at /home/patrik/.julia/v0.6/Cairo/deps/src/pango-1.32.6/pango/pangocairo-context.c:455
Type at /home/patrik/.julia/v0.6/Cairo/src/Cairo.jl:519
macro expansion at /home/patrik/.julia/v0.6/Cairo/test/runtests.jl:16 [inlined]
macro expansion at ./test.jl:860 [inlined]
anonymous at ./<missing> (unknown line)
jl_call_fptr_internal at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/julia_internal.h:339 [inlined]
jl_call_method_internal at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/julia_internal.h:358 [inlined]
jl_toplevel_eval_flex at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/toplevel.c:589
jl_parse_eval_all at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/ast.c:873
jl_load at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/toplevel.c:616
include_from_node1 at ./loading.jl:576
unknown function (ip: 0x7f493f07f64b)
jl_call_fptr_internal at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/julia_internal.h:339 [inlined]
jl_call_method_internal at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/julia_internal.h:358 [inlined]
jl_apply_generic at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/gf.c:1926
include at ./sysimg.jl:14
unknown function (ip: 0x7f493ef0cbab)
jl_call_fptr_internal at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/julia_internal.h:339 [inlined]
jl_call_method_internal at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/julia_internal.h:358 [inlined]
jl_apply_generic at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/gf.c:1926
process_options at ./client.jl:305
_start at ./client.jl:371
unknown function (ip: 0x7f493f08e758)
jl_call_fptr_internal at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/julia_internal.h:339 [inlined]
jl_call_method_internal at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/julia_internal.h:358 [inlined]
jl_apply_generic at /home/abuild/rpmbuild/BUILD/julia-0.6.2/src/gf.c:1926
jl_apply at /home/abuild/rpmbuild/BUILD/julia-0.6.2/ui/../src/julia.h:1424 [inlined]
true_main at /home/abuild/rpmbuild/BUILD/julia-0.6.2/ui/repl.c:127
main at /home/abuild/rpmbuild/BUILD/julia-0.6.2/ui/repl.c:264
__libc_start_main at /lib64/libc.so.6 (unknown line)
unknown function (ip: 0x401689)
unknown function (ip: 0xffffffffffffffff)
Allocations: 2346569 (Pool: 2345378; Big: 1191); GC: 2
========================================================================================[ ERROR: Cairo ]========================================================================================

InterruptException:

================================================================================================================================================================================================
ERROR: Cairo had test errors

[lobingera]

I think this is a different problem from the original - which was 0.7 version check and tied to BinDeps.
Is this an empty, fresh started julia session?

[patrikreiske]

Yes, it is.