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Update default time for segmentation in srun_fastsurfer #604

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Merged
dkuegler merged 1 commit into from
Nov 8, 2024
Merged

Update default time for segmentation in srun_fastsurfer #604

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4 changes: 2 additions & 2 deletions srun_fastsurfer.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ subject_list_awk_code_sid="\$1"
subject_list_awk_code_args="\$2"
subject_list_delim="="
jobarray=""
timelimit_seg=5
timelimit_seg=10
# 1mm can take 1h per hemi plus 1h extra on a single core (depending on cpu speed)
timelimit_surf=$((4 * 60))

Expand Down Expand Up @@ -150,7 +150,7 @@ SLURM-related options:
(one of the above).
default: slurm default partition
--time: a per-subject time limit for individual steps, must be number in minutes:
--time seg=<timelimit>: time limit for the segmentation pipeline (per subject), default: seg=5 (5min).
--time seg=<timelimit>: time limit for the segmentation pipeline (per subject), default: seg=10 (10min).
--time surf=<timelimit>: time limit for the surface reconstruction (per subject), default: surf=180 (180min)
--email: email address to send slurm status updates.

Expand Down