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Update documentation for 2.2 Release

  • update READMEs for --3T flag
  • update recon_surf/README.md to mention that a biasfield corrected image will only be created, if none exists.
  • remove mentions of the reconsurf docker image in recon_surf/README.md
  • update READMEs to use brun_fastsurfer.sh for multiple subjects
  • update comments in Tutorials (--3T flag)
  • fix alternative bias-field correction in recon_surf (if no biasfield image [orig_nu.mgz]) is present
  • extend --parallel_subjects option in brun_fastsurfer.sh (to allow serial segmentation and parallel surfaces)
  • set version to 2.2.0
  • set default subject_list splitter to = in srun_fastsurfer.sh to make it consistent with brun_fastsurfer.sh
  • reorder flags in srun_fastsurfer.sh --help and add --seg_only/--surf_only
  • add prepended subject_id in brun_fastsurfer.sh parallel mode

- update READMEs for --3T flag
- update recon_surf/README.md to mention that a biasfield corrected image will only be created, if none exists.
- remove mentions of the reconsurf docker image in recon_surf/README.md
- update READMEs to use brun_fastsurfer.sh for multiple subjects
- update comments in Tutorials (--3T flag)
- fix alternative bias-field correction in recon_surf (if no biasfield image [orig_nu.mgz]) is present
- extend --parallel_subjects option in brun_fastsurfer.sh (to allow serial segmentation and parallel surfaces)
- set version to 2.2.0
- set default subject_list splitter to = in srun_fastsurfer.sh to make it consistent with brun_fastsurfer.sh
- reorder flags in srun_fastsurfer.sh --help and add --seg_only/--surf_only
- add prepended subject_id in brun_fastsurfer.sh parallel mode
@dkuegler dkuegler marked this pull request as ready for review December 14, 2023 15:37
@m-reuter m-reuter merged commit 5ab400d into Deep-MI:dev Dec 14, 2023
@dkuegler dkuegler deleted the feature/doc/3T branch December 14, 2023 16:13
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2 participants