Skip to content

Conversation

@dkuegler
Copy link
Member

@dkuegler dkuegler commented Dec 1, 2023

Adjust memory limits to fail less often
fix globbing, so globbing does happen if subjects/cases are read

confirmation for known bad OASIS cases is running

This specifically is caused by very inconsistent memory usage of mris_sample_parc, which runs into memory limitations for 14GB of memory.

@dkuegler dkuegler force-pushed the fix/slurm/memory-limits branch from 0673b2f to f45bfea Compare December 1, 2023 17:45
fix globbing, so globbing does happen if subjects/cases are read
fix number of cpus per surf task (--hint=nomultithread makes sure hyperthreads are automatically allocated)
@dkuegler dkuegler force-pushed the fix/slurm/memory-limits branch from f45bfea to 9bebc7b Compare December 1, 2023 18:02
@dkuegler dkuegler marked this pull request as ready for review December 14, 2023 14:56
@dkuegler dkuegler merged commit aa70983 into Deep-MI:dev Dec 14, 2023
@dkuegler dkuegler deleted the fix/slurm/memory-limits branch December 14, 2023 14:57
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant