Fix listFiles() for task path inputs

Signed-off-by: Ben Sherman <[email protected]>

Author: bentsherman

docs/reference/stdlib-types.md

@@ -691,9 +691,6 @@ The following methods are available for manipulating files and directories in a
 `getPermissions() -> String`
 : Returns a file's permissions using the [symbolic notation](http://en.wikipedia.org/wiki/File_system_permissions#Symbolic_notation), e.g. `'rw-rw-r--'`.
 
-`list() -> List<String>`
-: Returns the first-level elements (files and directories) of a directory as a list of strings.
-
 `listFiles() -> List<Path>`
 : Returns the first-level elements (files and directories) of a directory as a list of Paths.
 

modules/nextflow/src/main/groovy/nextflow/processor/TaskPath.groovy

@@ -334,6 +334,9 @@ final class TaskPath implements Path, PathEscapeAware {
         FilesEx.or(getFileName(),other)
     }
 
+    List<Path> listFiles(Closure<Boolean> filter = null) {
+        FilesEx.listFiles(target, filter)
+    }
 
     String getPermissions() {
         FilesEx.getPermissions(target)

modules/nextflow/src/test/groovy/nextflow/processor/TaskPathTest.groovy

@@ -87,7 +87,6 @@ class TaskPathTest extends Specification {
 
         cleanup:
         folder.deleteDir()
-
     }
 
     def 'should validate equals method' () {
@@ -111,10 +110,8 @@ class TaskPathTest extends Specification {
         new TaskPath(p1, 'foo.txt').equals(t2)
 
         !t1.equals(t3)
-
     }
 
-
     def 'should validate operator equality' () {
         given:
         def p1 = Paths.get('/foo/bar/baz.txt')
@@ -138,7 +135,6 @@ class TaskPathTest extends Specification {
 
         expect:
         new TaskPath(Paths.get('/foo')).size() == 0
-
     }
 
     @Ignore
@@ -159,10 +155,8 @@ class TaskPathTest extends Specification {
 
         cleanup:
         folder.deleteDir()
-
     }
 
-
     def 'should serialised task path' () {
 
         given:
@@ -174,7 +168,22 @@ class TaskPathTest extends Specification {
         copy.equals(p)
     }
 
-}
+    def 'should support directory listing' () {
 
+        given:
+        def folder = Files.createTempDirectory('test')
+        folder.resolve('hello.txt').text = 'Hello world'
 
+        when:
+        def path = new TaskPath(folder, 'test')
+        def result = path.listFiles()
+
+        then:
+        result.size() == 1
+        result[0].name == 'hello.txt'
+
+        cleanup:
+        folder.deleteDir()
+    }
 
+}