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Integrate variables into DataTree #41
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Closed
TomNicholas
commented
May 23, 2022
|
Not sure why this is happening only on some test runs _______________ ERROR collecting datatree/tests/test_treenode.py _______________
ImportError while importing test module '/home/runner/work/datatree/datatree/datatree/tests/test_treenode.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/share/miniconda/envs/datatree/lib/python3.9/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
datatree/__init__.py:7: in <module>
from .datatree import DataTree
datatree/datatree.py:29: in <module>
from xarray.core.variable import Variable, calculate_dimensions
E ImportError: cannot import name 'calculate_dimensions' from 'xarray.core.variable' (/usr/share/miniconda/envs/datatree/lib/python3.9/site-packages/xarray/core/variable.py) |
This was referenced May 25, 2022
malmans2
reviewed
Jun 7, 2022
Co-authored-by: Mattia Almansi <[email protected]>
for more information, see https://pre-commit.ci
…ray-contrib/datatree into initial_integration_refactor
andersy005
reviewed
Jun 9, 2022
|
That passes 🍾 Will I need to change something in the conda-forge recipe to ensure that conda installations of datatree point to the pre-release of xarray now? EDIT: I definitely have to change this line somehow |
Yes, after releasing a new version of |
Closed
flamingbear
pushed a commit
to flamingbear/rewritten-datatree
that referenced
this pull request
Jan 19, 2024
* sketching out changes needed to integrate variables into DataTree * fixed some other basic conflicts * fix mypy errors * can create basic datatree node objects again * child-variable name collisions dectected correctly * in-progres * add _replace method * updated tests to assert identical instead of check .ds is expected_ds * refactor .ds setter to use _replace * refactor init to use _replace * refactor test tree to avoid init * attempt at copy methods * rewrote implementation of .copy method * xfailing test for deepcopying * pseudocode implementation of DatasetView * Revert "pseudocode implementation of DatasetView" This reverts commit 52ef23baaa4b6892cad2d69c61b43db831044630. * removed duplicated implementation of copy * reorganise API docs * expose data_vars, coords etc. properties * try except with calculate_dimensions private import * add keys/values/items methods * don't use has_data when .variables would do * explanation of basic properties * add data structures page to index * revert adding documentation in favour of that going in a different PR * correct deepcopy tests * use .data_vars in copy tests * make imports depend on most recent version of xarray Co-authored-by: Mattia Almansi <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * remove try except for internal import * depend on latest pre-release of xarray * correct name of version * xarray pre-release under pip in ci envs * correct methods * whatsnews * improve docstrings Co-authored-by: Mattia Almansi <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Began sketching out how we might move to integrate variables and children to exist at the same level within a
DataTreenode. Would eventually close #38, and would close #2.