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WIP: Multiple fixes #697

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Merged
merged 18 commits into from
Oct 23, 2013
Merged

WIP: Multiple fixes #697

merged 18 commits into from
Oct 23, 2013

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satra
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@satra satra commented Oct 21, 2013

I'll put these in a CHANGES file shortly:

  • ENH: Allow ants use a single mask image
  • ENH: Create configuration option for parameterizing directories with hashes
  • ENH: arrange nodes by topological sort with disconnected subgraphs
  • ENH: uses the nidm iri namespace for uuids
  • ENH: remove old reporting webpage (this is a WIP i hope to finish in a day or two)
  • FIX: example openfmri script now makes the contrast spec a hashed input
  • FIX: FILMGLS compatibility with FSL 5.0.5
  • FIX: Freesurfer recon-all resume now avoids setting inputs

i don't have the bandwidth to test these exhaustively. it would be good to have these in master to get feedback if anything broke.

@chrisgorgo
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The new parametrization will force all existing workflows to rerun?

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satra commented Oct 21, 2013

this parameterization was added in the joinnode pr. and by default would break a lot of substitution logic. in this i changed this so as this doesn't happen by default and those who need it can turn it on.

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satra commented Oct 21, 2013

@FredLoney - you might want to look at this - i disabled the parameterization by default as this was breaking substitutions that relied on iterable info. but this can be controlled through a config option now.

satra added 3 commits October 23, 2013 09:44
* upstream/master:
  output_name example
  name_source for lists
  Added support for custom output names
  changelog
  Further cleanup
  All tests pass
  further cleanup
  begin aFNI refactor
satra added a commit that referenced this pull request Oct 23, 2013
@satra satra merged commit 3219fc6 into nipy:master Oct 23, 2013
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2 participants