Estimated transform files in spm realign output directory for 4D files #1874
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Hi @satra, here the new solution :) thank you for your time and help. Jaime |
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Want to update the test? https://github.com/nipy/nipype/blob/master/nipype/utils/tests/test_filemanip.py#L323-L324 |
satra
reviewed
Mar 10, 2017
nipype/utils/filemanip.py
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| @@ -30,7 +30,7 @@ | |||
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| related_filetype_sets = [ | |||
| ('.hdr', '.img', '.mat'), | |||
| ('.hdr', '.img', '.mat', '.nii'), | |||
There was a problem hiding this comment.
perhaps add an additional row here:
('.nii', '.mat'),
There was a problem hiding this comment.
and remove the .nii from the previous set.
Codecov Report
@@ Coverage Diff @@
## master #1874 +/- ##
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- Coverage 73.11% 73.11% -0.01%
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Files 1061 1061
Lines 53367 53367
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- Hits 39019 39017 -2
- Misses 14348 14350 +2
Continue to review full report at Codecov.
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Hello,
I'm working with 4D files and SPM and I didn't find a way to copy the estimated transform files generated by spm realign into the output folder of my workflow.
Also, I found that when these header files are not in the working directory of another node (eg, normalization), then the results of Nipype are different from those when the same workflow is executed in SPM Matlab.
I hope these modifications are useful.
Cheers,
Jaime