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ENH: Enable new BBRegister init options for FSv6+ #1811

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Merged
merged 1 commit into from
Feb 13, 2017
Merged

ENH: Enable new BBRegister init options for FSv6+ #1811

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11 changes: 10 additions & 1 deletion nipype/interfaces/freesurfer/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -942,6 +942,12 @@ class BBRegisterInputSpec(FSTraitedSpec):
desc='output warped sourcefile either True or filename')


class BBRegisterInputSpec6(BBRegisterInputSpec):
init = traits.Enum('coreg', 'rr', 'spm', 'fsl', 'header', 'best', argstr='--init-%s',
usedefault=True, xor=['init_reg_file'],
desc='initialize registration with mri_coreg, spm, fsl, or header')


class BBRegisterOutputSpec(TraitedSpec):
out_reg_file = File(exists=True, desc='Output registration file')
out_fsl_file = File(desc='Output FLIRT-style registration file')
Expand All @@ -968,7 +974,10 @@ class BBRegister(FSCommand):
"""

_cmd = 'bbregister'
input_spec = BBRegisterInputSpec
if LooseVersion(FSVersion) < LooseVersion("6.0.0"):
input_spec = BBRegisterInputSpec
else:
input_spec = BBRegisterInputSpec6
output_spec = BBRegisterOutputSpec

def _list_outputs(self):
Expand Down