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Fix #1584 color graphing to loop through blue, red, green. #1585

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Merged
merged 4 commits into from
Dec 9, 2016

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ashgillman
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suggested to Fix #1584

Colors now cycle, yellow for top-level, then B, R, G, B, R, G...

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coveralls commented Aug 18, 2016

Coverage Status

Changes Unknown when pulling cfcc576 on ashgillman:allow_arbitrary_depth_graphing into * on nipy:master*.

@ashgillman ashgillman force-pushed the allow_arbitrary_depth_graphing branch from cfcc576 to 58fc79d Compare October 25, 2016 00:34
@ashgillman
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I realised this PR was very unclear, so I have added failing tests demonstrating the issue which now pass.

@ashgillman
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Whoops, looks like CI test don't have dot. Is there a way I can test producing the dot file without running graphviz to produce a png?
Actually, I thought dot was only run if it was present on the system?

@oesteban
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oesteban commented Oct 25, 2016

@ashgillman - apparently, the problem only affects travis. It makes sense since I think I included graphviz in the docker image (which is what circleci uses).

You'll need to install graphviz, in the .travis.yml file.

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codecov-io commented Oct 25, 2016

Current coverage is 71.02% (diff: 85.96%)

Merging #1585 into master will increase coverage by 0.26%

@@             master      #1585   diff @@
==========================================
  Files          1030       1030          
  Lines         51764      51818    +54   
  Methods           0          0          
  Messages          0          0          
  Branches       7327       7332     +5   
==========================================
+ Hits          36628      36806   +178   
+ Misses        14045      13890   -155   
- Partials       1091       1122    +31   

Powered by Codecov. Last update 55d052b...7ee83ba

@@ -33,7 +33,7 @@ install:
conda config --add channels conda-forge &&
conda update --yes conda &&
conda update --all -y python=$TRAVIS_PYTHON_VERSION &&
conda install -y nipype &&
conda install -y nipype graphviz &&
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Ah, yes that would make more sense wouldn't it

@ashgillman
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Is the remaining error due to my code or a run time thing? I can't really tell

@chrisgorgo
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I have restarted the build hopefully the error will go away. We are working on a fix.

@ashgillman
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Looks to have times out for Py27 (but not Py35) at test

nipype.pipeline.plugins.tests.test_callback.test_callback_multiproc_exception('f_node', 'f_node') ... ok

Not sure if this test is problematic or whether that test just happened to be running during the timeout

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Also I don't know if the Travis has rerun since I updated travis.yml

@chrisgorgo chrisgorgo merged commit 18468d1 into nipy:master Dec 9, 2016
@ashgillman ashgillman deleted the allow_arbitrary_depth_graphing branch December 9, 2016 01:41
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5 participants