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fix tbss_non_FA to match FSL's tbss_non_FA command #1033

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Merged
merged 8 commits into from
Feb 10, 2015
Merged

fix tbss_non_FA to match FSL's tbss_non_FA command #1033

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68c46d1
fix tbss_non_FA to match FSL's tbss_non_FA command
psharp1289 Jan 27, 2015
255d71c
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psharp1289 Feb 10, 2015
65f74d2
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psharp1289 Feb 10, 2015
5dc172e
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psharp1289 Feb 10, 2015
ec386ec
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psharp1289 Feb 10, 2015
6446951
fix: resolved conflict
satra Feb 10, 2015
c750406
fix: resolved conflict
satra Feb 10, 2015
a00df37
Merge pull request #1 from satra/pr1033
psharp1289 Feb 10, 2015
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1 change: 1 addition & 0 deletions CHANGES
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
Next release
============

* FIX: Amend create_tbss_non_fa() workflow to match FSL's tbss_non_fa command. (https://github.com/nipy/nipype/pull/1033)
* FIX: remove unused mandatory flag from spm normalize (https://github.com/nipy/nipype/pull/1048)
* ENH: Update ANTSCorticalThickness interface (https://github.com/nipy/nipype/pull/1013)
* FIX: Edge case with sparsemodels and PEP8 cleanup (https://github.com/nipy/nipype/pull/1046)
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8 changes: 6 additions & 2 deletions nipype/workflows/dmri/fsl/tbss.py
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Expand Up @@ -504,6 +504,7 @@ def create_tbss_non_FA(name='tbss_non_FA'):
>>> tbss_MD.inputs.inputnode.groupmask = './xxx'
>>> tbss_MD.inputs.inputnode.meanfa_file = './xxx'
>>> tbss_MD.inputs.inputnode.distance_map = []
>>> tbss_MD.inputs.inputnode.all_FA_file = './xxx'

Inputs::

Expand All @@ -513,6 +514,7 @@ def create_tbss_non_FA(name='tbss_non_FA'):
inputnode.groupmask
inputnode.meanfa_file
inputnode.distance_map
inputnode.all_FA_file

Outputs::

Expand All @@ -526,7 +528,8 @@ def create_tbss_non_FA(name='tbss_non_FA'):
'skeleton_thresh',
'groupmask',
'meanfa_file',
'distance_map']),
'distance_map',
'all_FA_file']),
name='inputnode')

# Apply the warpfield to the non FA image
Expand Down Expand Up @@ -560,10 +563,11 @@ def create_tbss_non_FA(name='tbss_non_FA'):

(inputnode, maskgroup, [('groupmask', 'in_file2')]),

(maskgroup, projectfa, [('out_file', 'data_file')]),
(maskgroup, projectfa, [('out_file', 'alt_data_file')]),
(inputnode, projectfa, [('skeleton_thresh', 'threshold'),
("meanfa_file", "in_file"),
("distance_map", "distance_map"),
("all_FA_file", 'data_file')
]),
])

Expand Down