File tree Expand file tree Collapse file tree 1 file changed +6
-1
lines changed Expand file tree Collapse file tree 1 file changed +6
-1
lines changed Original file line number Diff line number Diff line change @@ -405,6 +405,11 @@ jobs:
405
405
cp -r /tmp/data/${DATASET}/sub-01 /tmp/data/${DATASET}-t2only/sub-01
406
406
rm -f /tmp/data/${DATASET}-t2only/sub-01/ses-1mo/anat/*_T1w.*
407
407
tree /tmp/data/${DATASET}-t2only
408
+ mkdir -p /tmp/data/${DATASET}-t2only/derivatives
409
+ cp -r /tmp/data/${DATASET}/derivatives/precomputed /tmp/data/${DATASET}-t2only/derivatives
410
+ rm -f /tmp/data/${DATASET}-t2only/derivatives/precomputed/sub-01/ses-1mo/anat/*_T1w.*
411
+ tree /tmp/data/${DATASET}-t2only/derivatives/precomputed
412
+
408
413
- run :
409
414
name : Run nibabies single anatomical workflow
410
415
no_output_timeout : 1h
@@ -420,7 +425,7 @@ jobs:
420
425
--output-spaces MNIInfant:cohort-1 func \
421
426
--sloppy --write-graph --mem-mb 14000 \
422
427
--nthreads 4 -vv --age-months 2 --sloppy \
423
- --derivatives /tmp/data/${DATASET}/derivatives/precomputed \
428
+ --derivatives /tmp/data/${DATASET}-t2only /derivatives/precomputed \
424
429
--output-layout bids --anat-only
425
430
- run :
426
431
name : Checking outputs of T2-only nibabies anat
You can’t perform that action at this time.
0 commit comments