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CI: Filter out T1w precomputed derivatives from T2-only test
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.circleci/config.yml

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@@ -405,6 +405,11 @@ jobs:
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cp -r /tmp/data/${DATASET}/sub-01 /tmp/data/${DATASET}-t2only/sub-01
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rm -f /tmp/data/${DATASET}-t2only/sub-01/ses-1mo/anat/*_T1w.*
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tree /tmp/data/${DATASET}-t2only
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mkdir -p /tmp/data/${DATASET}-t2only/derivatives
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cp -r /tmp/data/${DATASET}/derivatives/precomputed /tmp/data/${DATASET}-t2only/derivatives
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rm -f /tmp/data/${DATASET}-t2only/derivatives/precomputed/sub-01/ses-1mo/anat/*_T1w.*
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tree /tmp/data/${DATASET}-t2only/derivatives/precomputed
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- run:
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name: Run nibabies single anatomical workflow
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no_output_timeout: 1h
@@ -420,7 +425,7 @@ jobs:
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--output-spaces MNIInfant:cohort-1 func \
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--sloppy --write-graph --mem-mb 14000 \
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--nthreads 4 -vv --age-months 2 --sloppy \
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--derivatives /tmp/data/${DATASET}/derivatives/precomputed \
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--derivatives /tmp/data/${DATASET}-t2only/derivatives/precomputed \
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--output-layout bids --anat-only
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- run:
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name: Checking outputs of T2-only nibabies anat

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