RF: Add init_n4bias_wf to run N4 bias correction #510
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Copies original file header to correct for ANTs bug
|
This looks good to me. Do you think it'd be worth adding to nipype? at the interface level itself. @chrisfilo ? |
chrisgorgo
approved these changes
May 5, 2017
|
I'm good with moving it to niworkflows (would it be useful in MRIQC?) or nipype, or with keeping it here for now. If we don't specifically need it for MRIQC, let's maybe merge it here, propose it in nipype, and then switch to nipype's version once it's accepted upstream? |
|
Sure, this should be included in fmriprep ASAP. I meant that in the long term this is something every nipype user may want. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
As discussed in #504, this wraps N4BiasFieldCorrection into a small workflow that copies the original header to the bias-corrected image.