minor: rst fixes and other small tweaks for better builds/clarity

Author: Sam Kleinman

source/administration/replica-sets.rst

@@ -84,7 +84,7 @@ This configures a :term:`hidden member` that is accessible at
 ``mongo2.example.net:27018``. See ":data:`host <members[n].host>`,"
 ":data:`priority <members[n].priority>`," and ":data:`hidden
 <members[n].hidden>`" for more information about these settings. When
-you specify a full configuration object with :fun:`rs.add()`, you must
+you specify a full configuration object with :func:`rs.add()`, you must
 declare the ``_id`` field, which is not automatically populated in
 this case.
 

source/index.rst

@@ -2,6 +2,8 @@
 The MongoDB Manual
 ==================
 
+.. default-domain:: mongodb
+
 .. seealso:: The :ref:`MongoDB Wiki <mongodb-wiki>` for additional
    documentation.
 

source/reference/aggregation.rst

@@ -7,14 +7,14 @@ Aggregation Framework Operators
 .. default-domain:: agg
 
 The aggregation framework provides the ability to project, process,
-and/or control the output of the query, without using ":term:`map
-reduce`." Aggregation uses a syntax that resembles the same syntax and
+and/or control the output of the query, without using ":term:`map-reduce`."
+Aggregation uses a syntax that resembles the same syntax and
 form as "regular" MongoDB database queries.
 
 These aggregation operations are all accessible by way of the
-:func:`aggregate()`. While all examples in this document use this
-function, :func:`aggregate()` is merely a wrapper around the
-:term:`database command` :dbcommand:`aggregate`. Therefore the
+:mongodb:func:`aggregate()`. While all examples in this document use this
+function, :mongodb:func:`aggregate()` is merely a wrapper around the
+:term:`database command` :mongodb:dbcommand:`aggregate`. Therefore the
 following prototype aggregate are equivelent:
 
 .. code-block:: javascript
@@ -555,7 +555,7 @@ The current pipeline operators are:
       The :pipeline:`$sort` cannot begin sorting documents until
       previous operators in the pipeline have returned all output.
 
-   .. warning:: Unless the :pipline:`$sort` operator can use an index,
+   .. warning:: Unless the :pipeline:`$sort` operator can use an index,
       in the current release, the sort must fit within memory. This
       may cause problems when sorting large numbers of documents.
 

source/reference/bsondump.rst

@@ -13,7 +13,7 @@ Synopsis
 
 The :program:`bsondump` converts :term:`BSON` files into human-readable
 formats, including :term:`JSON`. For example, :program:`bsondump` is useful
-for reading the output files generated by :command:`mongodump`.
+for reading the output files generated by :program:`mongodump`.
 
 Options
 -------

source/reference/glossary.rst

@@ -508,7 +508,7 @@ Glossary
       necessary to expedite the initial distribution of documents
       among shards, by manually dividing the collection into chunks.
       In this case, you pre-split the chunks instead of waiting for
-      the :terms:`balancer` to do it.
+      MongoDB to create splits.
 
    SSD
       Solid State Disk. A high-performance disk drive that uses solid

source/reference/mongotop.rst

@@ -2,6 +2,8 @@
 
 .. default-domain:: mongodb
 
+.. binary:: mongotop
+
 ==========================
 :program:`mongotop` Manual
 ==========================
@@ -37,7 +39,7 @@ Options
 
 .. program:: mongotop
 
-.. option:: .. option:: --help
+.. option:: --help
 
    Returns a basic help and usage text.