Regression: Extension hangs at startup at "reactivating terminal message", spinner loops indefinitely

[corneliusroemer]

Type: Bug

Unfortunately the issue #23968 #23963 has come back, version: v2024.13.2024082001 (pre-release)

Locator is set to native. The workaround with js works but only after a relatively long load time this time (5-10 seconds)

When starting vscode, Python extension never finishes loading, gets stuck at "Reactivating terminals".

Python log

2024-08-21 11:54:57.593 [info] Experiment 'pythonaacf' is active
2024-08-21 11:54:57.593 [info] Experiment 'pythonCreateEnvOnPipInstall' is active
2024-08-21 11:54:57.593 [info] Experiment 'pythonRecommendTensorboardExt' is active
2024-08-21 11:54:57.593 [info] Experiment 'pythonTerminalEnvVarActivation' is active
2024-08-21 11:54:57.593 [info] Experiment 'pythonTestAdapter' is active
2024-08-21 11:54:57.593 [info] Native locator: Refresh started
2024-08-21 11:54:57.593 [info] Default formatter is set to charliermarsh.ruff for workspace /Users/corneliusromer/code/loculus
2024-08-21 11:54:57.647 [info] > pyenv which python
2024-08-21 11:54:57.647 [info] cwd: .
2024-08-21 11:54:57.956 [warning] Unknown environment manager: Poetry
2024-08-21 11:54:57.960 [error] [
  'Failed to check whether to display prompt for conda inherit env setting, Class name = v, completed in 206ms, has a falsy return value, Arg 1: <Uri:/Users/corneliusromer/code/loculus>, Return Value: undefined',
  [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
  	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
  	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
  	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
  	at process.processImmediate (node:internal/timers:478:21)] {
    code: -4,
    data: undefined
  }
]
2024-08-21 11:54:57.960 [error] [
  'getActivatedEnvironmentVariables, Class name = D, completed in 206ms, has a falsy return value, Arg 1: <Uri:/Users/corneliusromer/code/loculus>, Arg 2: undefined, Arg 3: undefined, Arg 4: "/bin/zsh"',
  [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
  	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
  	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
  	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
  	at process.processImmediate (node:internal/timers:478:21)] {
    code: -4,
    data: undefined
  }
]
2024-08-21 11:54:57.960 [error] Failed to apply terminal env vars undefined [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
	at process.processImmediate (node:internal/timers:478:21)] {
  code: -4,
  data: undefined
}
2024-08-21 11:54:57.960 [error] Python Extension: interpreterManager.refresh [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
	at process.processImmediate (node:internal/timers:478:21)] {
  code: -4,
  data: undefined
}
2024-08-21 11:54:57.960 [error] [
  'Failed to intialize conda inherit env prompt, Class name = v, completed in 207ms, has a falsy return value, Arg 1: <Uri:/Users/corneliusromer/code/loculus>, Return Value: undefined',
  [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
  	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
  	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
  	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
  	at process.processImmediate (node:internal/timers:478:21)] {
    code: -4,
    data: undefined
  }
]
2024-08-21 11:54:57.960 [error] [
  'Failed to activate a workspace, Class name = m, completed in 389ms, has a falsy return value, Arg 1: <Uri:/Users/corneliusromer/code/loculus>, Arg 2: {"started":1724234097480}, Return Value: undefined',
  [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
  	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
  	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
  	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
  	at process.processImmediate (node:internal/timers:478:21)] {
    code: -4,
    data: undefined
  }
]
2024-08-21 11:54:57.960 [error] Failure during activation. [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
	at process.processImmediate (node:internal/timers:478:21)] {
  code: -4,
  data: undefined
}
2024-08-21 11:54:57.960 [error] sendStartupTelemetry() failed. [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
	at process.processImmediate (node:internal/timers:478:21)] {
  code: -4,
  data: undefined
}
2024-08-21 11:54:58.054 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/bin/conda
2024-08-21 11:54:58.575 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda
2024-08-21 11:54:58.688 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda
2024-08-21 11:54:58.748 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda
2024-08-21 11:54:58.751 [info] Conda environment manager found at: /Users/corneliusromer/miniforge3/bin/conda
2024-08-21 11:54:58.753 [info] Conda environment manager found at: /Users/corneliusromer/Miniforge3/bin/conda
2024-08-21 11:54:58.757 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/smithy/bin/conda
2024-08-21 11:54:58.769 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda
2024-08-21 11:54:58.769 [info] Conda environment manager found at: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda
2024-08-21 11:54:58.772 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda
2024-08-21 11:54:58.777 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/pango3116/bin/conda
2024-08-21 11:54:58.779 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda
2024-08-21 11:54:58.783 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/pango402/bin/conda
2024-08-21 11:54:58.784 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda
2024-08-21 11:54:58.785 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/bioconda/bin/conda
2024-08-21 11:54:58.786 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda
2024-08-21 11:54:58.787 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda
2024-08-21 11:54:58.799 [info] Conda environment manager found at: /Users/corneliusromer/code/conda-base/.dev-env/bin/conda
2024-08-21 11:54:58.804 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda
2024-08-21 11:54:58.829 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda
2024-08-21 11:54:58.833 [info] Native locator: Refresh finished in 1313 ms

[corneliusroemer]

Python Locator.log

2024-08-21 11:54:57.593 [info] Starting Python Locator /Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/python-env-tools/bin/pet server
2024-08-21 11:54:57.956 [info] Discovered manager: (Poetry) /Library/Frameworks/Python.framework/Versions/3.11/bin/poetry
2024-08-21 11:54:57.958 [error] Failed to execute Python to resolve info "/Users/corneliusromer/micromamba/envs/py12": Permission denied (os error 13)
2024-08-21 11:54:57.958 [warning] Unknown Python Env "/Users/corneliusromer/micromamba/envs/py12"
2024-08-21 11:54:57.958 [error] Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
2024-08-21 11:54:57.961 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3
2024-08-21 11:54:57.962 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12
2024-08-21 11:54:57.967 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3
2024-08-21 11:54:57.975 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12
2024-08-21 11:54:57.981 [info] Discovered env: /Users/corneliusromer/.local/share/virtualenvs/ncov-ingest-PlHIQus7/bin/python
2024-08-21 11:54:57.988 [info] Discovered env: /Library/Developer/CommandLineTools/usr/bin/python3
2024-08-21 11:54:57.992 [info] Discovered env: /usr/local/bin/python3
2024-08-21 11:54:58.004 [info] Env ("/opt/local/bin/python3.10") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.10", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.10", version: "3.10.13.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.10"]) } and reported as Some(GlobalPaths)
2024-08-21 11:54:58.006 [info] Discovered env: /usr/local/bin/python3.12
2024-08-21 11:54:58.006 [info] Discovered env: /Users/corneliusromer/.virtualenvs/ena-read-docs/bin/python
2024-08-21 11:54:58.007 [info] Discovered env: /opt/local/bin/python3.10
2024-08-21 11:54:58.009 [info] Env ("/opt/local/bin/python3.11") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.11", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.11", version: "3.11.7.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.11"]) } and reported as Some(GlobalPaths)
2024-08-21 11:54:58.012 [info] Discovered env: /opt/local/bin/python3.11
2024-08-21 11:54:58.019 [info] Resolved Python Environment /opt/homebrew/Caskroom/miniforge/base/bin/python
2024-08-21 11:54:58.037 [warning] Unable to find conda package Python in "/Users/corneliusromer/.pixi/envs/python", trying slower approach
2024-08-21 11:54:58.044 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/.pixi/envs/python", executable: Some("/Users/corneliusromer/.pixi/envs/python/bin/python"), version: Some("3.12.2"), conda_dir: None, arch: None }
2024-08-21 11:54:58.047 [info] Discovered env: /Users/corneliusromer/.pixi/envs/python/bin/python
2024-08-21 11:54:58.048 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.051 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python
2024-08-21 11:54:58.054 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/bin/conda
2024-08-21 11:54:58.055 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/bioconda-64/bin/python
2024-08-21 11:54:58.057 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.059 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py12/bin/python
2024-08-21 11:54:58.091 [info] Discovered env: /usr/bin/python3
2024-08-21 11:54:58.304 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.309 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.311 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.319 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.322 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/gofasta", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.375 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/matchspec
2024-08-21 11:54:58.382 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/osxtest", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.385 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-submission", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-submission/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.390 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cmaple", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.390 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/poseidon", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.393 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.399 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextstrain-base", executable: Some("/Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.408 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.415 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/khipu", executable: Some("/Users/corneliusromer/micromamba/envs/khipu/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.423 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/otd", executable: Some("/Users/corneliusromer/micromamba/envs/otd/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.425 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pypy-arm", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.428 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/ldc", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.433 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_3_2", executable: Some("/Users/corneliusromer/micromamba/envs/s7_3_2/bin/python"), version: Some("3.10.14"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdevcf", executable: Some("/Users/corneliusromer/micromamba/envs/nbdevcf/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/obecni", executable: Some("/Users/corneliusromer/micromamba/envs/obecni/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fhdev", executable: Some("/Users/corneliusromer/micromamba/envs/fhdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.442 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.442 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/polars", executable: Some("/Users/corneliusromer/micromamba/envs/polars/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-cmaple", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev-arm", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade-sc2", executable: Some("/Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-test", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.445 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.445 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.446 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mamba", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.447 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen", executable: Some("/Users/corneliusromer/micromamba/envs/xopen/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.448 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/treetime", executable: Some("/Users/corneliusromer/micromamba/envs/treetime/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.450 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mpox-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.451 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/miniwdl", executable: Some("/Users/corneliusromer/micromamba/envs/miniwdl/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.451 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/clangdev", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.453 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.456 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdev", executable: Some("/Users/corneliusromer/micromamba/envs/nbdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.458 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ingest", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.459 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_17", executable: Some("/Users/corneliusromer/micromamba/envs/s8_17/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.460 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py36-64", executable: Some("/Users/corneliusromer/micromamba/envs/py36-64/bin/python"), version: Some("3.6.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.462 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sreality", executable: Some("/Users/corneliusromer/micromamba/envs/sreality/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.465 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.468 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils-bioconda", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.468 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/smdpcli", executable: Some("/Users/corneliusromer/micromamba/envs/smdpcli/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.472 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/codespell", executable: Some("/Users/corneliusromer/micromamba/envs/codespell/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.475 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/trimadap", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.477 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur", executable: Some("/Users/corneliusromer/micromamba/envs/augur/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.480 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nwkfmtdev", executable: Some("/Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.482 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/usher", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.484 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/auspice", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cdk8s", executable: Some("/Users/corneliusromer/micromamba/envs/cdk8s/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/biopython", executable: Some("/Users/corneliusromer/micromamba/envs/biopython/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.487 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.491 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7py11", executable: Some("/Users/corneliusromer/micromamba/envs/s7py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.491 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake-dev", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.492 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_32", executable: Some("/Users/corneliusromer/micromamba/envs/s7_32/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.496 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fh", executable: Some("/Users/corneliusromer/micromamba/envs/fh/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.498 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/basetest", executable: Some("/Users/corneliusromer/micromamba/envs/basetest/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.499 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/mamba/build/envs/test", executable: Some("/Users/corneliusromer/code/mamba/build/envs/test/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.501 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/grayskull", executable: Some("/Users/corneliusromer/micromamba/envs/grayskull/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.502 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/email-validator", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.504 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lapis-silo", executable: Some("/Users/corneliusromer/micromamba/envs/lapis-silo/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.512 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pl019", executable: Some("/Users/corneliusromer/micromamba/envs/pl019/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.513 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pc", executable: Some("/Users/corneliusromer/micromamba/envs/pc/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.514 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy-x86", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.514 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/raxml", executable: Some("/Users/corneliusromer/micromamba/envs/raxml/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.515 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy=7.3.11
2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/build-raxml", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/zstdtest", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.517 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy", executable: Some("/Users/corneliusromer/micromamba/envs/hyphy/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.520 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/throwaway", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.520 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_13py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_13py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.521 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py39-test", executable: Some("/Users/corneliusromer/micromamba/envs/py39-test/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.521 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.522 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/related-issues", executable: Some("/Users/corneliusromer/micromamba/envs/related-issues/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.522 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py38-test", executable: Some("/Users/corneliusromer/micromamba/envs/py38-test/bin/python"), version: Some("3.8.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.523 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies_test", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.523 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/matchspec", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.524 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test1", executable: Some("/Users/corneliusromer/micromamba/envs/test1/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.525 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_1py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_1py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.526 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sdow-backend", executable: Some("/Users/corneliusromer/micromamba/envs/sdow-backend/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.527 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.528 [info] Discovered env: /Users/corneliusromer/micromamba/envs/zstdtest
2024-08-21 11:54:58.529 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lr_quant_benchmark", executable: Some("/Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.529 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.531 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy-arm
2024-08-21 11:54:58.532 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-native", executable: Some("/Users/corneliusromer/micromamba/envs/iqtree-native/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.534 [info] Discovered env: /Users/corneliusromer/micromamba/envs/gofasta
2024-08-21 11:54:58.535 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade
2024-08-21 11:54:58.535 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree
2024-08-21 11:54:58.537 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils-bioconda
2024-08-21 11:54:58.540 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils
2024-08-21 11:54:58.541 [info] Discovered env: /Users/corneliusromer/micromamba/envs/email-validator
2024-08-21 11:54:58.542 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/conda-base
2024-08-21 11:54:58.543 [info] Discovered env: /Users/corneliusromer/micromamba/envs/poseidon
2024-08-21 11:54:58.544 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test
2024-08-21 11:54:58.546 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pypy-arm
2024-08-21 11:54:58.548 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice
2024-08-21 11:54:58.549 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-test
2024-08-21 11:54:58.551 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cmaple
2024-08-21 11:54:58.552 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py38-test/bin/python
2024-08-21 11:54:58.553 [info] Discovered env: /Users/corneliusromer/micromamba/envs/trimadap
2024-08-21 11:54:58.553 [info] Discovered env: /Users/corneliusromer/micromamba/envs/throwaway
2024-08-21 11:54:58.554 [info] Discovered env: /Users/corneliusromer/micromamba/envs/matchspec
2024-08-21 11:54:58.555 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen/bin/python
2024-08-21 11:54:58.556 [info] Discovered env: /Users/corneliusromer/micromamba/envs/osxtest
2024-08-21 11:54:58.557 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-cmaple
2024-08-21 11:54:58.559 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18/bin/python
2024-08-21 11:54:58.559 [info] Discovered env: /Users/corneliusromer/micromamba/envs/build-raxml
2024-08-21 11:54:58.560 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice-dev
2024-08-21 11:54:58.560 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/bin/python
2024-08-21 11:54:58.561 [info] Discovered env: /Users/corneliusromer/micromamba/envs/codespell/bin/python
2024-08-21 11:54:58.561 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python
2024-08-21 11:54:58.562 [info] Discovered env: /Users/corneliusromer/micromamba/envs/auspice
2024-08-21 11:54:58.562 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pc/bin/python
2024-08-21 11:54:58.564 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy-x86
2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python
2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lapis-silo/bin/python
2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py36-64/bin/python
2024-08-21 11:54:58.566 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy/bin/python
2024-08-21 11:54:58.567 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10/bin/python
2024-08-21 11:54:58.568 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10py11/bin/python
2024-08-21 11:54:58.569 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/taxonium/bin/python
2024-08-21 11:54:58.569 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pyfastx/bin/python
2024-08-21 11:54:58.569 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_1py11/bin/python
2024-08-21 11:54:58.571 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/aliasor/bin/python
2024-08-21 11:54:58.572 [info] Discovered env: /Users/corneliusromer/micromamba/envs/related-issues/bin/python
2024-08-21 11:54:58.573 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-submission/bin/python
2024-08-21 11:54:58.574 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test1/bin/python
2024-08-21 11:54:58.575 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda
2024-08-21 11:54:58.576 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/python
2024-08-21 11:54:58.578 [info] Discovered env: /Users/corneliusromer/micromamba/envs/miniwdl/bin/python
2024-08-21 11:54:58.580 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/managed-conda/bin/python
2024-08-21 11:54:58.581 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.584 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sdow-backend/bin/python
2024-08-21 11:54:58.590 [info] Discovered env: /Users/corneliusromer/micromamba/envs/treetime/bin/python
2024-08-21 11:54:58.591 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cdk8s/bin/python
2024-08-21 11:54:58.593 [info] Discovered env: /Users/corneliusromer/micromamba/envs/obecni/bin/python
2024-08-21 11:54:58.610 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python
2024-08-21 11:54:58.619 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fhdev/bin/python
2024-08-21 11:54:58.623 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/grayskullenv/bin/python
2024-08-21 11:54:58.625 [info] Discovered env: /Users/corneliusromer/micromamba/envs/ldc
2024-08-21 11:54:58.626 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/testenv
2024-08-21 11:54:58.627 [info] Discovered env: /Users/corneliusromer/micromamba/envs/khipu/bin/python
2024-08-21 11:54:58.628 [info] Discovered env: /Users/corneliusromer/micromamba/envs/biopython/bin/python
2024-08-21 11:54:58.629 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakefmt/bin/python
2024-08-21 11:54:58.629 [info] Discovered env: /Users/corneliusromer/micromamba/envs/polars/bin/python
2024-08-21 11:54:58.632 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_13py11/bin/python
2024-08-21 11:54:58.633 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python
2024-08-21 11:54:58.635 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-native/bin/python
2024-08-21 11:54:58.636 [info] Discovered env: /Users/corneliusromer/micromamba/envs/grayskull/bin/python
2024-08-21 11:54:58.637 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pl019/bin/python
2024-08-21 11:54:58.638 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen-arm", executable: Some("/Users/corneliusromer/micromamba/envs/xopen-arm/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.641 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16/bin/python
2024-08-21 11:54:58.643 [info] Discovered env: /Users/corneliusromer/micromamba/envs/otd/bin/python
2024-08-21 11:54:58.643 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py39-test/bin/python
2024-08-21 11:54:58.645 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/default", executable: Some("/Users/corneliusromer/micromamba/envs/default/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.645 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ena", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ena/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.646 [info] Discovered env: /Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env
2024-08-21 11:54:58.647 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mamba
2024-08-21 11:54:58.648 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime9/bin/python
2024-08-21 11:54:58.649 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_32/bin/python
2024-08-21 11:54:58.650 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy/bin/python
2024-08-21 11:54:58.651 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdevcf/bin/python
2024-08-21 11:54:58.651 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python
2024-08-21 11:54:58.652 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18py11/bin/python
2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_3_2/bin/python
2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/clangdev
2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16py11/bin/python
2024-08-21 11:54:58.654 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smdpcli/bin/python
2024-08-21 11:54:58.655 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python
2024-08-21 11:54:58.656 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sreality/bin/python
2024-08-21 11:54:58.657 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakemake/bin/python
2024-08-21 11:54:58.657 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake/bin/python
2024-08-21 11:54:58.658 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7py11/bin/python
2024-08-21 11:54:58.659 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_17/bin/python
2024-08-21 11:54:58.660 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ena/bin/python
2024-08-21 11:54:58.665 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime/bin/python
2024-08-21 11:54:58.668 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fh/bin/python
2024-08-21 11:54:58.669 [info] Discovered env: /Users/corneliusromer/micromamba/envs/default/bin/python
2024-08-21 11:54:58.670 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen-arm/bin/python
2024-08-21 11:54:58.671 [info] Discovered env: /opt/homebrew/bin/python3.10
2024-08-21 11:54:58.671 [info] Discovered env: /Users/corneliusromer/micromamba/envs/raxml/bin/python
2024-08-21 11:54:58.673 [info] Discovered env: /opt/homebrew/bin/python3
2024-08-21 11:54:58.674 [info] Discovered env: /opt/homebrew/bin/python3.11
2024-08-21 11:54:58.675 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/opencv/bin/python
2024-08-21 11:54:58.675 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python
2024-08-21 11:54:58.680 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdev/bin/python
2024-08-21 11:54:58.681 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python
2024-08-21 11:54:58.683 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/r/bin/python
2024-08-21 11:54:58.687 [info] Discovered env: /Users/corneliusromer/micromamba/envs/usher
2024-08-21 11:54:58.688 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda
2024-08-21 11:54:58.693 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/python
2024-08-21 11:54:58.731 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/polars-book/bin/python
2024-08-21 11:54:58.748 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda
2024-08-21 11:54:58.748 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/python
2024-08-21 11:54:58.751 [info] Discovered manager: (Conda) /Users/corneliusromer/miniforge3/bin/conda
2024-08-21 11:54:58.752 [info] Discovered env: /Users/corneliusromer/miniforge3/bin/python
2024-08-21 11:54:58.753 [info] Discovered manager: (Conda) /Users/corneliusromer/Miniforge3/bin/conda
2024-08-21 11:54:58.753 [info] Discovered env: /Users/corneliusromer/Miniforge3/bin/python
2024-08-21 11:54:58.753 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env
2024-08-21 11:54:58.756 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/augur-dev/bin/python
2024-08-21 11:54:58.757 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/smithy/bin/conda
2024-08-21 11:54:58.758 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smithy/bin/python
2024-08-21 11:54:58.762 [info] Resolved /opt/homebrew/bin/python3.10
2024-08-21 11:54:58.762 [info] Resolved /opt/homebrew/bin/python3.11
2024-08-21 11:54:58.768 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolinUsherSampled/bin/python
2024-08-21 11:54:58.768 [info] Resolved /opt/homebrew/bin/python3
2024-08-21 11:54:58.768 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/wf-artic
2024-08-21 11:54:58.768 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev/bin/python
2024-08-21 11:54:58.769 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda
2024-08-21 11:54:58.769 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/python
2024-08-21 11:54:58.769 [info] Discovered manager: (Conda) /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda
2024-08-21 11:54:58.770 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/python
2024-08-21 11:54:58.771 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python
2024-08-21 11:54:58.771 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python
2024-08-21 11:54:58.772 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda
2024-08-21 11:54:58.774 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/python
2024-08-21 11:54:58.774 [info] Discovered env: /Users/corneliusromer/code/mamba/build/envs/test/bin/python
2024-08-21 11:54:58.776 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python
2024-08-21 11:54:58.777 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango3116/bin/conda
2024-08-21 11:54:58.778 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango3116/bin/python
2024-08-21 11:54:58.779 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda
2024-08-21 11:54:58.779 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/python
2024-08-21 11:54:58.780 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env
2024-08-21 11:54:58.783 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango402/bin/conda
2024-08-21 11:54:58.783 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango402/bin/python
2024-08-21 11:54:58.784 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda
2024-08-21 11:54:58.784 [info] Discovered env: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/python
2024-08-21 11:54:58.785 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda/bin/conda
2024-08-21 11:54:58.786 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda/bin/python
2024-08-21 11:54:58.786 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python
2024-08-21 11:54:58.786 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda
2024-08-21 11:54:58.787 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/python
2024-08-21 11:54:58.787 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda
2024-08-21 11:54:58.787 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/python
2024-08-21 11:54:58.788 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur/bin/python
2024-08-21 11:54:58.788 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python
2024-08-21 11:54:58.789 [info] Discovered env: /Users/corneliusromer/micromamba/envs/basetest/bin/python
2024-08-21 11:54:58.790 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python
2024-08-21 11:54:58.799 [info] Discovered manager: (Conda) /Users/corneliusromer/code/conda-base/.dev-env/bin/conda
2024-08-21 11:54:58.799 [info] Discovered env: /Users/corneliusromer/code/conda-base/.dev-env/bin/python
2024-08-21 11:54:58.800 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-reinstall/bin/python
2024-08-21 11:54:58.804 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda
2024-08-21 11:54:58.804 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/python
2024-08-21 11:54:58.810 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python
2024-08-21 11:54:58.829 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda
2024-08-21 11:54:58.829 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/python
2024-08-21 11:54:58.831 [info] Locator Conda took 889.415334ms
2024-08-21 11:54:58.831 [info] Locator Homebrew took 733.111166ms
2024-08-21 11:54:58.831 [info] Locator MacCommandLineTools took 44.430167ms
2024-08-21 11:54:58.831 [info] Locator MacPythonOrg took 53.257666ms
2024-08-21 11:54:58.831 [info] Locator MacXCode took 15.667µs
2024-08-21 11:54:58.831 [info] Locator PipEnv took 33.166µs
2024-08-21 11:54:58.831 [info] Locator Poetry took 12.3265ms
2024-08-21 11:54:58.832 [info] Locator PyEnv took 438.708µs
2024-08-21 11:54:58.832 [info] Locator Venv took 7.209µs
2024-08-21 11:54:58.832 [info] Locator VirtualEnv took 10.042µs
2024-08-21 11:54:58.832 [info] Locator VirtualEnvWrapper took 11.25µs
2024-08-21 11:54:58.832 [info] Locator GlobalVirtualEnvs took 67.541875ms
2024-08-21 11:54:58.832 [info] Locator Locators took 889.610875ms
2024-08-21 11:54:58.832 [info] Locator Path took 892.056416ms
2024-08-21 11:54:58.832 [info] Locator Workspaces took 12.959µs
2024-08-21 11:54:58.832 [info] Refresh completed in 892ms
2024-08-21 11:58:15.137 [info] Starting Python Locator /Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/python-env-tools/bin/pet server
2024-08-21 11:58:15.289 [info] Discovered manager: (Poetry) /Library/Frameworks/Python.framework/Versions/3.11/bin/poetry
2024-08-21 11:58:15.295 [error] Failed to execute Python to resolve info "/Users/corneliusromer/micromamba/envs/py12": Permission denied (os error 13)
2024-08-21 11:58:15.297 [warning] Unknown Python Env "/Users/corneliusromer/micromamba/envs/py12"
2024-08-21 11:58:15.298 [error] Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
2024-08-21 11:58:15.300 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.340 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python
2024-08-21 11:58:15.412 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3
2024-08-21 11:58:15.413 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12
2024-08-21 11:58:15.415 [info] Discovered env: /usr/local/bin/python3
2024-08-21 11:58:15.416 [info] Discovered env: /Users/corneliusromer/.virtualenvs/ena-read-docs/bin/python
2024-08-21 11:58:15.416 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.416 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/bin/conda
2024-08-21 11:58:15.416 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/bioconda-64/bin/python
2024-08-21 11:58:15.416 [info] Discovered env: /Library/Developer/CommandLineTools/usr/bin/python3
2024-08-21 11:58:15.416 [warning] Unable to find conda package Python in "/Users/corneliusromer/.pixi/envs/python", trying slower approach
2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py12/bin/python
2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/.local/share/virtualenvs/ncov-ingest-PlHIQus7/bin/python
2024-08-21 11:58:15.417 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/.pixi/envs/python", executable: Some("/Users/corneliusromer/.pixi/envs/python/bin/python"), version: Some("3.12.2"), conda_dir: None, arch: None }
2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/.pixi/envs/python/bin/python
2024-08-21 11:58:15.417 [info] Env ("/opt/local/bin/python3.10") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.10", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.10", version: "3.10.13.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.10"]) } and reported as Some(GlobalPaths)
2024-08-21 11:58:15.417 [info] Discovered env: /opt/local/bin/python3.10
2024-08-21 11:58:15.417 [info] Env ("/opt/local/bin/python3.11") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.11", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.11", version: "3.11.7.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.11"]) } and reported as Some(GlobalPaths)
2024-08-21 11:58:15.417 [info] Resolved Python Environment /opt/homebrew/Caskroom/miniforge/base/bin/python
2024-08-21 11:58:15.428 [info] Discovered env: /opt/local/bin/python3.11
2024-08-21 11:58:15.429 [info] Discovered env: /usr/local/bin/python3.12
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-test", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/build-raxml", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-cmaple", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/clangdev", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/gofasta", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy-x86", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/ldc", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/auspice", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cmaple", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/email-validator", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/khipu", executable: Some("/Users/corneliusromer/micromamba/envs/khipu/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev-arm", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-test
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/poseidon", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/trimadap", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/basetest", executable: Some("/Users/corneliusromer/micromamba/envs/basetest/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-submission", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-submission/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lr_quant_benchmark", executable: Some("/Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ena", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ena/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/osxtest", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mamba", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/mamba/build/envs/test", executable: Some("/Users/corneliusromer/code/mamba/build/envs/test/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/usher", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/matchspec", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-native", executable: Some("/Users/corneliusromer/micromamba/envs/iqtree-native/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pypy-arm", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/zstdtest", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/throwaway", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ingest", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-cmaple
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/gofasta
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cdk8s", executable: Some("/Users/corneliusromer/micromamba/envs/cdk8s/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils-bioconda", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/matchspec
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fhdev", executable: Some("/Users/corneliusromer/micromamba/envs/fhdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cmaple
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/poseidon
2024-08-21 11:58:15.433 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env
2024-08-21 11:58:15.434 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lapis-silo", executable: Some("/Users/corneliusromer/micromamba/envs/lapis-silo/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.434 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree
2024-08-21 11:58:15.434 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fh", executable: Some("/Users/corneliusromer/micromamba/envs/fh/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/codespell", executable: Some("/Users/corneliusromer/micromamba/envs/codespell/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nwkfmtdev", executable: Some("/Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdevcf", executable: Some("/Users/corneliusromer/micromamba/envs/nbdevcf/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/treetime", executable: Some("/Users/corneliusromer/micromamba/envs/treetime/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/biopython", executable: Some("/Users/corneliusromer/micromamba/envs/biopython/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade-sc2", executable: Some("/Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_32", executable: Some("/Users/corneliusromer/micromamba/envs/s7_32/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sdow-backend", executable: Some("/Users/corneliusromer/micromamba/envs/sdow-backend/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mpox-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur", executable: Some("/Users/corneliusromer/micromamba/envs/augur/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py39-test", executable: Some("/Users/corneliusromer/micromamba/envs/py39-test/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/related-issues", executable: Some("/Users/corneliusromer/micromamba/envs/related-issues/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/grayskull", executable: Some("/Users/corneliusromer/micromamba/envs/grayskull/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy", executable: Some("/Users/corneliusromer/micromamba/envs/hyphy/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdev", executable: Some("/Users/corneliusromer/micromamba/envs/nbdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen", executable: Some("/Users/corneliusromer/micromamba/envs/xopen/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/otd", executable: Some("/Users/corneliusromer/micromamba/envs/otd/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-submission/bin/python
2024-08-21 11:58:15.435 [info] Discovered env: /Users/corneliusromer/micromamba/envs/throwaway
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pl019", executable: Some("/Users/corneliusromer/micromamba/envs/pl019/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/email-validator
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_1py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_1py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pc", executable: Some("/Users/corneliusromer/micromamba/envs/pc/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/miniwdl", executable: Some("/Users/corneliusromer/micromamba/envs/miniwdl/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdevcf/bin/python
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_32/bin/python
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test1", executable: Some("/Users/corneliusromer/micromamba/envs/test1/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies_test", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env
2024-08-21 11:58:15.437 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/ldc
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils
2024-08-21 11:58:15.437 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sreality", executable: Some("/Users/corneliusromer/micromamba/envs/sreality/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/osxtest
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen/bin/python
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pc/bin/python
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fhdev/bin/python
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/zstdtest
2024-08-21 11:58:15.438 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen-arm", executable: Some("/Users/corneliusromer/micromamba/envs/xopen-arm/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.438 [info] Discovered manager: (Conda) /Users/corneliusromer/code/conda-base/.dev-env/bin/conda
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/code/conda-base/.dev-env/bin/python
2024-08-21 11:58:15.438 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/default", executable: Some("/Users/corneliusromer/micromamba/envs/default/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/usher
2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/matchspec
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/basetest/bin/python
2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy-arm
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sreality/bin/python
2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy=7.3.11
2024-08-21 11:58:15.439 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18py11/bin/python
2024-08-21 11:58:15.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_3_2", executable: Some("/Users/corneliusromer/micromamba/envs/s7_3_2/bin/python"), version: Some("3.10.14"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_17", executable: Some("/Users/corneliusromer/micromamba/envs/s8_17/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [info] Discovered env: /Users/corneliusromer/micromamba/envs/clangdev
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/polars", executable: Some("/Users/corneliusromer/micromamba/envs/polars/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/smdpcli", executable: Some("/Users/corneliusromer/micromamba/envs/smdpcli/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextstrain-base", executable: Some("/Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10/bin/python
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/testenv
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake-dev", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py36-64", executable: Some("/Users/corneliusromer/micromamba/envs/py36-64/bin/python"), version: Some("3.6.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py38-test", executable: Some("/Users/corneliusromer/micromamba/envs/py38-test/bin/python"), version: Some("3.8.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_13py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_13py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/obecni", executable: Some("/Users/corneliusromer/micromamba/envs/obecni/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [info] Discovered env: /opt/homebrew/bin/python3
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7py11", executable: Some("/Users/corneliusromer/micromamba/envs/s7py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/raxml", executable: Some("/Users/corneliusromer/micromamba/envs/raxml/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [info] Discovered manager: (Conda) /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda
2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/python
2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/micromamba/envs/otd/bin/python
2024-08-21 11:58:15.441 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice
2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/micromamba/envs/build-raxml
2024-08-21 11:58:15.441 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/smithy/bin/conda
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smithy/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy-x86
2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/grayskullenv/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/grayskull/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mamba
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py36-64/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/conda-base
2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/augur-dev/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/auspice
2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/polars-book/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/obecni/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdev/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ena/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/related-issues/bin/python
2024-08-21 11:58:15.443 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/khipu/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_1py11/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fh/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/miniwdl/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lapis-silo/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-native/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/biopython/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /usr/bin/python3
2024-08-21 11:58:15.445 [info] Discovered env: /opt/homebrew/bin/python3.10
2024-08-21 11:58:15.445 [info] Discovered env: /opt/homebrew/bin/python3.11
2024-08-21 11:58:15.446 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/treetime/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py39-test/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10py11/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/codespell/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/trimadap
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sdow-backend/bin/python
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pypy-arm
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cdk8s/bin/python
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python
2024-08-21 11:58:15.448 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice-dev
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/code/mamba/build/envs/test/bin/python
2024-08-21 11:58:15.449 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakefmt/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen-arm/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pl019/bin/python
2024-08-21 11:58:15.450 [info] Discovered manager: (Conda) /Users/corneliusromer/Miniforge3/bin/conda
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/Miniforge3/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/default/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smdpcli/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_17/bin/python
2024-08-21 11:58:15.450 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda
2024-08-21 11:58:15.450 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16py11/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_3_2/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/polars/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env
2024-08-21 11:58:15.451 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/aliasor/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python
2024-08-21 11:58:15.452 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda
2024-08-21 11:58:15.452 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py38-test/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/raxml/bin/python
2024-08-21 11:58:15.452 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango3116/bin/conda
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango3116/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7py11/bin/python
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_13py11/bin/python
2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda/bin/conda
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda/bin/python
2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/python
2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/miniforge3/bin/conda
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/miniforge3/bin/python
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test1/bin/python
2024-08-21 11:58:15.454 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16/bin/python
2024-08-21 11:58:15.454 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python
2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda
2024-08-21 11:58:15.454 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/python
2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda
2024-08-21 11:58:15.454 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/python
2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda
2024-08-21 11:58:15.455 [info] Discovered env: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/python
2024-08-21 11:58:15.456 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/wf-artic
2024-08-21 11:58:15.457 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda
2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/python
2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/taxonium/bin/python
2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakemake/bin/python
2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime/bin/python
2024-08-21 11:58:15.458 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/managed-conda/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime9/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolinUsherSampled/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pyfastx/bin/python
2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/opencv/bin/python
2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/r/bin/python
2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-reinstall/bin/python
2024-08-21 11:58:15.461 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils-bioconda
2024-08-21 11:58:15.461 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda
2024-08-21 11:58:15.462 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/python
2024-08-21 11:58:15.462 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango402/bin/conda
2024-08-21 11:58:15.462 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango402/bin/python
2024-08-21 11:58:15.462 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda
2024-08-21 11:58:15.462 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/python
2024-08-21 11:58:15.462 [info] Locator Conda took 274.565416ms
2024-08-21 11:58:15.462 [info] Locator Homebrew took 192.286375ms
2024-08-21 11:58:15.462 [info] Locator MacCommandLineTools took 44.558542ms
2024-08-21 11:58:15.462 [info] Locator MacPythonOrg took 32.52675ms
2024-08-21 11:58:15.463 [info] Locator MacXCode took 10.124625ms
2024-08-21 11:58:15.463 [info] Locator PipEnv took 6.291µs
2024-08-21 11:58:15.463 [info] Locator Poetry took 8.090917ms
2024-08-21 11:58:15.463 [info] Locator PyEnv took 8.423208ms
2024-08-21 11:58:15.463 [info] Locator Venv took 8.054166ms
2024-08-21 11:58:15.463 [info] Locator VirtualEnv took 10.176041ms
2024-08-21 11:58:15.463 [info] Locator VirtualEnvWrapper took 7.774708ms
2024-08-21 11:58:15.463 [info] Locator GlobalVirtualEnvs took 57.434875ms
2024-08-21 11:58:15.463 [info] Locator Locators took 274.743ms
2024-08-21 11:58:15.463 [info] Locator Path took 275.254459ms
2024-08-21 11:58:15.463 [info] Locator Workspaces took 22.701958ms
2024-08-21 11:58:15.463 [info] Refresh completed in 275ms
2024-08-21 11:58:15.463 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3
2024-08-21 11:58:15.463 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12
2024-08-21 11:58:15.463 [info] Resolved /opt/homebrew/bin/python3
2024-08-21 11:58:15.469 [info] Resolved /opt/homebrew/bin/python3.11
2024-08-21 11:58:15.469 [info] Resolved /opt/homebrew/bin/python3.10

[DonJayamanne]

Sorry you are still running into issues
Please can you leave the setting to js, then set the log level to ‘Trace’ via ‘Developer : Set log level’
Then select the command, ‘Python: clear cache and reload window’

Next open a python file and open a terminal
Finally after everything stabilises (10-15s), please copy the python logs and upload here

[DonJayamanne]

And thank you very much for the detailed logs and your patience