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Making changes to experiment notebook based on changes to tutorial document (#249)
* making changes to notebook based on changes to tutorial document * test update to assert_almost_equal * reference repo details in byoc guide
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‎bootstrap/README.md‎

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@@ -4,7 +4,7 @@ To use this existing project structure and scripts for your new ML project, you
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Bootstrapping will prepare a directory structure for your project which includes:
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* renaming files and folders from the base project name `diabetes` to your project name
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* renaming files and folders from the base project name `diabetes_regression` to your project name
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* fixing imports and absolute path based on your project name
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* deleting and cleaning up some directories
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‎diabetes_regression/training/test_train.py‎

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@@ -10,7 +10,7 @@ def test_train_model():
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reg_model = train_model(data, {"alpha": 1.2})
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preds = reg_model.predict([[1], [2]])
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np.testing.assert_equal(preds, [9.93939393939394, 9.03030303030303])
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np.testing.assert_almost_equal(preds, [9.93939393939394, 9.03030303030303])
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def test_get_model_metrics():

‎docs/custom_model.md‎

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@@ -2,8 +2,8 @@
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This document provides steps to follow when using this repository as a template to train models and deploy the models with real-time inference in Azure ML with your own scripts and data.
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1. Follow the MLOpsPython [Getting Started](https://github.com/microsoft/MLOpsPython/blob/master/docs/getting_started.md) guide
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1. Follow the MLOpsPython [bootstrap instructions](https://github.com/microsoft/MLOpsPython/blob/master/bootstrap/README.md) to create your project starting point
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1. Follow the MLOpsPython [Getting Started](getting_started.md) guide
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1. Follow the MLOpsPython [bootstrap instructions](../bootstrap/README.md) to create your project starting point
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1. Configure training data
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1. [If necessary] Convert your ML experimental code into production ready code
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1. Replace the training code
@@ -13,11 +13,13 @@ This document provides steps to follow when using this repository as a template
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## Follow the Getting Started guide
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Follow the [Getting Started](https://github.com/microsoft/MLOpsPython/blob/master/docs/getting_started.md) guide to set up the infrastructure and pipelines to execute MLOpsPython.
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Follow the [Getting Started](getting_started.md) guide to set up the infrastructure and pipelines to execute MLOpsPython.
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Take a look at the [Repo Details](code_description.md) document for a description of the structure of this repository.
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## Follow the Bootstrap instructions
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The [Bootstrap from MLOpsPython repository](https://github.com/microsoft/MLOpsPython/blob/master/bootstrap/README.md) guide will help you to quickly prepare the repository for your project.
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The [Bootstrap from MLOpsPython repository](../bootstrap/README.md) guide will help you to quickly prepare the repository for your project.
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**Note:** Since the bootstrap script will rename the `diabetes_regression` folder to the project name of your choice, we'll refer to your project as `[project name]` when paths are involved.
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‎experimentation/Diabetes Ridge Regression Training.ipynb‎

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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"execution_count": 1,
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"metadata": {},
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"outputs": [],
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"source": [
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"from sklearn.datasets import load_diabetes\n",
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"from sklearn.linear_model import Ridge\n",
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"from sklearn.metrics import mean_squared_error\n",
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"from sklearn.model_selection import train_test_split\n",
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"import joblib"
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"import joblib\n",
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"import pandas as pd"
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]
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},
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{
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"execution_count": 6,
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"metadata": {},
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"outputs": [],
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"source": [
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"X, y = load_diabetes(return_X_y=True)"
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"sample_data = load_diabetes()\n",
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"\n",
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"df = pd.DataFrame(\n",
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" data=sample_data.data,\n",
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" columns=sample_data.feature_names)\n",
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"df['Y'] = sample_data.target"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"execution_count": 7,
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"metadata": {},
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"outputs": [
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{
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}
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],
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"source": [
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"print(X.shape)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 5,
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"(442,)\n"
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]
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}
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],
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"source": [
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"print(y.shape)"
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"print(df.shape)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 8,
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"execution_count": 11,
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"metadata": {},
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"outputs": [
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{
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" <thead>\n",
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" <tr style=\"text-align: right;\">\n",
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" <th></th>\n",
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" <th>0</th>\n",
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" <th>1</th>\n",
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" <th>2</th>\n",
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" <th>3</th>\n",
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" <th>4</th>\n",
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" <th>5</th>\n",
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" <th>6</th>\n",
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" <th>7</th>\n",
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" <th>8</th>\n",
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" <th>9</th>\n",
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" <th>age</th>\n",
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" <th>sex</th>\n",
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" <th>bmi</th>\n",
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" <th>bp</th>\n",
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" <th>s1</th>\n",
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" <th>s2</th>\n",
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" <th>s3</th>\n",
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" <th>s4</th>\n",
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" <th>s5</th>\n",
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" <th>s6</th>\n",
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" <th>Y</th>\n",
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" </tr>\n",
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" </thead>\n",
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" <tbody>\n",
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" <td>4.420000e+02</td>\n",
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" <td>4.420000e+02</td>\n",
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" <td>4.420000e+02</td>\n",
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" <td>442.000000</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <td>mean</td>\n",
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" <td>-3.639623e-16</td>\n",
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" <td>1.309912e-16</td>\n",
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" <td>-8.013951e-16</td>\n",
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" <td>1.289818e-16</td>\n",
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" <td>-9.042540e-17</td>\n",
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" <td>1.301121e-16</td>\n",
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" <td>-4.563971e-16</td>\n",
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" <td>3.863174e-16</td>\n",
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" <td>-3.848103e-16</td>\n",
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" <td>-3.398488e-16</td>\n",
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" <td>-3.634285e-16</td>\n",
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" <td>1.308343e-16</td>\n",
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" <td>-8.045349e-16</td>\n",
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" <td>1.281655e-16</td>\n",
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" <td>-8.835316e-17</td>\n",
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" <td>1.327024e-16</td>\n",
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" <td>-4.574646e-16</td>\n",
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" <td>3.777301e-16</td>\n",
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" <td>-3.830854e-16</td>\n",
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" <td>-3.412882e-16</td>\n",
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" <td>152.133484</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <td>std</td>\n",
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" <td>4.761905e-02</td>\n",
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" <td>4.761905e-02</td>\n",
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" <td>4.761905e-02</td>\n",
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" <td>77.093005</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <td>min</td>\n",
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" <td>-7.639450e-02</td>\n",
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" <td>-1.260974e-01</td>\n",
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" <td>-1.377672e-01</td>\n",
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" <td>25.000000</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <td>25%</td>\n",
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" <td>-3.949338e-02</td>\n",
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" <td>-3.324879e-02</td>\n",
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" <td>-3.317903e-02</td>\n",
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" <td>87.000000</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <td>50%</td>\n",
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" <td>-2.592262e-03</td>\n",
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" <td>-1.947634e-03</td>\n",
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" <td>-1.077698e-03</td>\n",
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" <td>140.500000</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <td>75%</td>\n",
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" <td>3.430886e-02</td>\n",
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" <td>3.243323e-02</td>\n",
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" <td>2.791705e-02</td>\n",
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" <td>211.500000</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <td>max</td>\n",
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" <td>1.852344e-01</td>\n",
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" <td>1.335990e-01</td>\n",
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" <td>1.356118e-01</td>\n",
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" <td>346.000000</td>\n",
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" </tr>\n",
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" </tbody>\n",
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"</table>\n",
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"</div>"
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],
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"text/plain": [
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" 0 1 2 3 4 \\\n",
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" age sex bmi bp s1 \\\n",
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"count 4.420000e+02 4.420000e+02 4.420000e+02 4.420000e+02 4.420000e+02 \n",
230-
"mean -3.639623e-16 1.309912e-16 -8.013951e-16 1.289818e-16 -9.042540e-17 \n",
228+
"mean -3.634285e-16 1.308343e-16 -8.045349e-16 1.281655e-16 -8.835316e-17 \n",
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"std 4.761905e-02 4.761905e-02 4.761905e-02 4.761905e-02 4.761905e-02 \n",
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"min -1.072256e-01 -4.464164e-02 -9.027530e-02 -1.123996e-01 -1.267807e-01 \n",
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"25% -3.729927e-02 -4.464164e-02 -3.422907e-02 -3.665645e-02 -3.424784e-02 \n",
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"50% 5.383060e-03 -4.464164e-02 -7.283766e-03 -5.670611e-03 -4.320866e-03 \n",
235233
"75% 3.807591e-02 5.068012e-02 3.124802e-02 3.564384e-02 2.835801e-02 \n",
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"max 1.107267e-01 5.068012e-02 1.705552e-01 1.320442e-01 1.539137e-01 \n",
237235
"\n",
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" 5 6 7 8 9 \n",
239-
"count 4.420000e+02 4.420000e+02 4.420000e+02 4.420000e+02 4.420000e+02 \n",
240-
"mean 1.301121e-16 -4.563971e-16 3.863174e-16 -3.848103e-16 -3.398488e-16 \n",
241-
"std 4.761905e-02 4.761905e-02 4.761905e-02 4.761905e-02 4.761905e-02 \n",
242-
"min -1.156131e-01 -1.023071e-01 -7.639450e-02 -1.260974e-01 -1.377672e-01 \n",
243-
"25% -3.035840e-02 -3.511716e-02 -3.949338e-02 -3.324879e-02 -3.317903e-02 \n",
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"50% -3.819065e-03 -6.584468e-03 -2.592262e-03 -1.947634e-03 -1.077698e-03 \n",
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"75% 2.984439e-02 2.931150e-02 3.430886e-02 3.243323e-02 2.791705e-02 \n",
246-
"max 1.987880e-01 1.811791e-01 1.852344e-01 1.335990e-01 1.356118e-01 "
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" s2 s3 s4 s5 s6 \\\n",
237+
"count 4.420000e+02 4.420000e+02 4.420000e+02 4.420000e+02 4.420000e+02 \n",
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"mean 1.327024e-16 -4.574646e-16 3.777301e-16 -3.830854e-16 -3.412882e-16 \n",
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"std 4.761905e-02 4.761905e-02 4.761905e-02 4.761905e-02 4.761905e-02 \n",
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"min -1.156131e-01 -1.023071e-01 -7.639450e-02 -1.260974e-01 -1.377672e-01 \n",
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"25% -3.035840e-02 -3.511716e-02 -3.949338e-02 -3.324879e-02 -3.317903e-02 \n",
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"50% -3.819065e-03 -6.584468e-03 -2.592262e-03 -1.947634e-03 -1.077698e-03 \n",
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"75% 2.984439e-02 2.931150e-02 3.430886e-02 3.243323e-02 2.791705e-02 \n",
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"max 1.987880e-01 1.811791e-01 1.852344e-01 1.335990e-01 1.356118e-01 \n",
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"\n",
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" Y \n",
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"count 442.000000 \n",
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"mean 152.133484 \n",
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"std 77.093005 \n",
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"min 25.000000 \n",
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"25% 87.000000 \n",
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"50% 140.500000 \n",
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"75% 211.500000 \n",
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"max 346.000000 "
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]
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},
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"execution_count": 8,
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"execution_count": 11,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"import pandas as pd\n",
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"features = pd.DataFrame(X)\n",
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"features.describe()"
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"# All data in a single dataframe\n",
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"df.describe()"
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]
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},
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{
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"execution_count": 12,
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"metadata": {},
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"outputs": [],
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"source": [
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"X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2, random_state=0)\n",
280+
"X = df.drop('Y', axis=1).values\n",
281+
"y = df['Y'].values\n",
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"\n",
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"X_train, X_test, y_train, y_test = train_test_split(\n",
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" X, y, test_size=0.2, random_state=0)\n",
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"data = {\"train\": {\"X\": X_train, \"y\": y_train},\n",
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" \"test\": {\"X\": X_test, \"y\": y_test}}"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"execution_count": 16,
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"metadata": {},
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"outputs": [
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{
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" normalize=False, random_state=None, solver='auto', tol=0.001)"
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]
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},
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"execution_count": 4,
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"execution_count": 16,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"alpha = 0.5\n",
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"# experiment parameters\n",
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"args = {\n",
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" \"alpha\": 0.5\n",
317+
"}\n",
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"\n",
305-
"reg = Ridge(alpha=alpha)\n",
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"reg.fit(data[\"train\"][\"X\"], data[\"train\"][\"y\"])"
319+
"reg_model = Ridge(**args)\n",
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"reg_model.fit(data[\"train\"][\"X\"], data[\"train\"][\"y\"])"
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]
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},
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{
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},
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{
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"cell_type": "code",
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"execution_count": 6,
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"execution_count": 18,
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"mse: 3298.9096058070622\n"
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"{'mse': 3298.9096058070622}\n"
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]
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}
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],
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"source": [
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"preds = reg.predict(data[\"test\"][\"X\"])\n",
331-
"print(\"mse: \", mean_squared_error(preds, y_test))"
344+
"preds = reg_model.predict(data[\"test\"][\"X\"])\n",
345+
"mse = mean_squared_error(preds, y_test)\n",
346+
"metrics = {\"mse\": mse}\n",
347+
"print(metrics)"
332348
]
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},
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{
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python (storedna)",
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"display_name": "Python 3",
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"language": "python",
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"name": "storedna"
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.9"
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"version": "3.7.4"
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}
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},
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"nbformat": 4,

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