Merge branch 'gs/commit-graph-path-filter'

Introduce an extension to the commit-graph to make it efficient to
check for the paths that were modified at each commit using Bloom
filters.

* gs/commit-graph-path-filter:
  bloom: ignore renames when computing changed paths
  commit-graph: add GIT_TEST_COMMIT_GRAPH_CHANGED_PATHS test flag
  t4216: add end to end tests for git log with Bloom filters
  revision.c: add trace2 stats around Bloom filter usage
  revision.c: use Bloom filters to speed up path based revision walks
  commit-graph: add --changed-paths option to write subcommand
  commit-graph: reuse existing Bloom filters during write
  commit-graph: write Bloom filters to commit graph file
  commit-graph: examine commits by generation number
  commit-graph: examine changed-path objects in pack order
  commit-graph: compute Bloom filters for changed paths
  diff: halt tree-diff early after max_changes
  bloom.c: core Bloom filter implementation for changed paths.
  bloom.c: introduce core Bloom filter constructs
  bloom.c: add the murmur3 hash implementation
  commit-graph: define and use MAX_NUM_CHUNKS

Author: gitster

Documentation/git-commit-graph.txt

@@ -57,6 +57,11 @@ or `--stdin-packs`.)
 With the `--append` option, include all commits that are present in the
 existing commit-graph file.
 +
+With the `--changed-paths` option, compute and write information about the
+paths changed between a commit and it's first parent. This operation can
+take a while on large repositories. It provides significant performance gains
+for getting history of a directory or a file with `git log -- <path>`.
++
 With the `--split[=<strategy>]` option, write the commit-graph as a
 chain of multiple commit-graph files stored in
 `<dir>/info/commit-graphs`. Commit-graph layers are merged based on the

Documentation/technical/commit-graph-format.txt

@@ -17,6 +17,9 @@ metadata, including:
 - The parents of the commit, stored using positional references within
   the graph file.
 
+- The Bloom filter of the commit carrying the paths that were changed between
+  the commit and its first parent, if requested.
+
 These positional references are stored as unsigned 32-bit integers
 corresponding to the array position within the list of commit OIDs. Due
 to some special constants we use to track parents, we can store at most
@@ -93,6 +96,33 @@ CHUNK DATA:
       positions for the parents until reaching a value with the most-significant
       bit on. The other bits correspond to the position of the last parent.
 
+  Bloom Filter Index (ID: {'B', 'I', 'D', 'X'}) (N * 4 bytes) [Optional]
+    * The ith entry, BIDX[i], stores the number of 8-byte word blocks in all
+      Bloom filters from commit 0 to commit i (inclusive) in lexicographic
+      order. The Bloom filter for the i-th commit spans from BIDX[i-1] to
+      BIDX[i] (plus header length), where BIDX[-1] is 0.
+    * The BIDX chunk is ignored if the BDAT chunk is not present.
+
+  Bloom Filter Data (ID: {'B', 'D', 'A', 'T'}) [Optional]
+    * It starts with header consisting of three unsigned 32-bit integers:
+      - Version of the hash algorithm being used. We currently only support
+	value 1 which corresponds to the 32-bit version of the murmur3 hash
+	implemented exactly as described in
+	https://en.wikipedia.org/wiki/MurmurHash#Algorithm and the double
+	hashing technique using seed values 0x293ae76f and 0x7e646e2 as
+	described in https://doi.org/10.1007/978-3-540-30494-4_26 "Bloom Filters
+	in Probabilistic Verification"
+      - The number of times a path is hashed and hence the number of bit positions
+	      that cumulatively determine whether a file is present in the commit.
+      - The minimum number of bits 'b' per entry in the Bloom filter. If the filter
+	      contains 'n' entries, then the filter size is the minimum number of 64-bit
+	      words that contain n*b bits.
+    * The rest of the chunk is the concatenation of all the computed Bloom
+      filters for the commits in lexicographic order.
+    * Note: Commits with no changes or more than 512 changes have Bloom filters
+      of length zero.
+    * The BDAT chunk is present if and only if BIDX is present.
+
   Base Graphs List (ID: {'B', 'A', 'S', 'E'}) [Optional]
       This list of H-byte hashes describe a set of B commit-graph files that
       form a commit-graph chain. The graph position for the ith commit in this

Makefile

@@ -689,6 +689,7 @@ X =
 PROGRAMS += $(patsubst %.o,git-%$X,$(PROGRAM_OBJS))
 
 TEST_BUILTINS_OBJS += test-advise.o
+TEST_BUILTINS_OBJS += test-bloom.o
 TEST_BUILTINS_OBJS += test-chmtime.o
 TEST_BUILTINS_OBJS += test-config.o
 TEST_BUILTINS_OBJS += test-ctype.o
@@ -834,6 +835,7 @@ LIB_OBJS += base85.o
 LIB_OBJS += bisect.o
 LIB_OBJS += blame.o
 LIB_OBJS += blob.o
+LIB_OBJS += bloom.o
 LIB_OBJS += branch.o
 LIB_OBJS += bulk-checkin.o
 LIB_OBJS += bundle.o

bloom.c

@@ -0,0 +1,276 @@
+#include "git-compat-util.h"
+#include "bloom.h"
+#include "diff.h"
+#include "diffcore.h"
+#include "revision.h"
+#include "hashmap.h"
+#include "commit-graph.h"
+#include "commit.h"
+
+define_commit_slab(bloom_filter_slab, struct bloom_filter);
+
+struct bloom_filter_slab bloom_filters;
+
+struct pathmap_hash_entry {
+    struct hashmap_entry entry;
+    const char path[FLEX_ARRAY];
+};
+
+static uint32_t rotate_left(uint32_t value, int32_t count)
+{
+	uint32_t mask = 8 * sizeof(uint32_t) - 1;
+	count &= mask;
+	return ((value << count) | (value >> ((-count) & mask)));
+}
+
+static inline unsigned char get_bitmask(uint32_t pos)
+{
+	return ((unsigned char)1) << (pos & (BITS_PER_WORD - 1));
+}
+
+static int load_bloom_filter_from_graph(struct commit_graph *g,
+				   struct bloom_filter *filter,
+				   struct commit *c)
+{
+	uint32_t lex_pos, start_index, end_index;
+
+	while (c->graph_pos < g->num_commits_in_base)
+		g = g->base_graph;
+
+	/* The commit graph commit 'c' lives in doesn't carry bloom filters. */
+	if (!g->chunk_bloom_indexes)
+		return 0;
+
+	lex_pos = c->graph_pos - g->num_commits_in_base;
+
+	end_index = get_be32(g->chunk_bloom_indexes + 4 * lex_pos);
+
+	if (lex_pos > 0)
+		start_index = get_be32(g->chunk_bloom_indexes + 4 * (lex_pos - 1));
+	else
+		start_index = 0;
+
+	filter->len = end_index - start_index;
+	filter->data = (unsigned char *)(g->chunk_bloom_data +
+					sizeof(unsigned char) * start_index +
+					BLOOMDATA_CHUNK_HEADER_SIZE);
+
+	return 1;
+}
+
+/*
+ * Calculate the murmur3 32-bit hash value for the given data
+ * using the given seed.
+ * Produces a uniformly distributed hash value.
+ * Not considered to be cryptographically secure.
+ * Implemented as described in https://en.wikipedia.org/wiki/MurmurHash#Algorithm
+ */
+uint32_t murmur3_seeded(uint32_t seed, const char *data, size_t len)
+{
+	const uint32_t c1 = 0xcc9e2d51;
+	const uint32_t c2 = 0x1b873593;
+	const uint32_t r1 = 15;
+	const uint32_t r2 = 13;
+	const uint32_t m = 5;
+	const uint32_t n = 0xe6546b64;
+	int i;
+	uint32_t k1 = 0;
+	const char *tail;
+
+	int len4 = len / sizeof(uint32_t);
+
+	uint32_t k;
+	for (i = 0; i < len4; i++) {
+		uint32_t byte1 = (uint32_t)data[4*i];
+		uint32_t byte2 = ((uint32_t)data[4*i + 1]) << 8;
+		uint32_t byte3 = ((uint32_t)data[4*i + 2]) << 16;
+		uint32_t byte4 = ((uint32_t)data[4*i + 3]) << 24;
+		k = byte1 | byte2 | byte3 | byte4;
+		k *= c1;
+		k = rotate_left(k, r1);
+		k *= c2;
+
+		seed ^= k;
+		seed = rotate_left(seed, r2) * m + n;
+	}
+
+	tail = (data + len4 * sizeof(uint32_t));
+
+	switch (len & (sizeof(uint32_t) - 1)) {
+	case 3:
+		k1 ^= ((uint32_t)tail[2]) << 16;
+		/*-fallthrough*/
+	case 2:
+		k1 ^= ((uint32_t)tail[1]) << 8;
+		/*-fallthrough*/
+	case 1:
+		k1 ^= ((uint32_t)tail[0]) << 0;
+		k1 *= c1;
+		k1 = rotate_left(k1, r1);
+		k1 *= c2;
+		seed ^= k1;
+		break;
+	}
+
+	seed ^= (uint32_t)len;
+	seed ^= (seed >> 16);
+	seed *= 0x85ebca6b;
+	seed ^= (seed >> 13);
+	seed *= 0xc2b2ae35;
+	seed ^= (seed >> 16);
+
+	return seed;
+}
+
+void fill_bloom_key(const char *data,
+					size_t len,
+					struct bloom_key *key,
+					const struct bloom_filter_settings *settings)
+{
+	int i;
+	const uint32_t seed0 = 0x293ae76f;
+	const uint32_t seed1 = 0x7e646e2c;
+	const uint32_t hash0 = murmur3_seeded(seed0, data, len);
+	const uint32_t hash1 = murmur3_seeded(seed1, data, len);
+
+	key->hashes = (uint32_t *)xcalloc(settings->num_hashes, sizeof(uint32_t));
+	for (i = 0; i < settings->num_hashes; i++)
+		key->hashes[i] = hash0 + i * hash1;
+}
+
+void add_key_to_filter(const struct bloom_key *key,
+					   struct bloom_filter *filter,
+					   const struct bloom_filter_settings *settings)
+{
+	int i;
+	uint64_t mod = filter->len * BITS_PER_WORD;
+
+	for (i = 0; i < settings->num_hashes; i++) {
+		uint64_t hash_mod = key->hashes[i] % mod;
+		uint64_t block_pos = hash_mod / BITS_PER_WORD;
+
+		filter->data[block_pos] |= get_bitmask(hash_mod);
+	}
+}
+
+void init_bloom_filters(void)
+{
+	init_bloom_filter_slab(&bloom_filters);
+}
+
+struct bloom_filter *get_bloom_filter(struct repository *r,
+				      struct commit *c,
+					  int compute_if_not_present)
+{
+	struct bloom_filter *filter;
+	struct bloom_filter_settings settings = DEFAULT_BLOOM_FILTER_SETTINGS;
+	int i;
+	struct diff_options diffopt;
+	int max_changes = 512;
+
+	if (bloom_filters.slab_size == 0)
+		return NULL;
+
+	filter = bloom_filter_slab_at(&bloom_filters, c);
+
+	if (!filter->data) {
+		load_commit_graph_info(r, c);
+		if (c->graph_pos != COMMIT_NOT_FROM_GRAPH &&
+			r->objects->commit_graph->chunk_bloom_indexes) {
+			if (load_bloom_filter_from_graph(r->objects->commit_graph, filter, c))
+				return filter;
+			else
+				return NULL;
+		}
+	}
+
+	if (filter->data || !compute_if_not_present)
+		return filter;
+
+	repo_diff_setup(r, &diffopt);
+	diffopt.flags.recursive = 1;
+	diffopt.detect_rename = 0;
+	diffopt.max_changes = max_changes;
+	diff_setup_done(&diffopt);
+
+	if (c->parents)
+		diff_tree_oid(&c->parents->item->object.oid, &c->object.oid, "", &diffopt);
+	else
+		diff_tree_oid(NULL, &c->object.oid, "", &diffopt);
+	diffcore_std(&diffopt);
+
+	if (diff_queued_diff.nr <= max_changes) {
+		struct hashmap pathmap;
+		struct pathmap_hash_entry *e;
+		struct hashmap_iter iter;
+		hashmap_init(&pathmap, NULL, NULL, 0);
+
+		for (i = 0; i < diff_queued_diff.nr; i++) {
+			const char *path = diff_queued_diff.queue[i]->two->path;
+
+			/*
+			* Add each leading directory of the changed file, i.e. for
+			* 'dir/subdir/file' add 'dir' and 'dir/subdir' as well, so
+			* the Bloom filter could be used to speed up commands like
+			* 'git log dir/subdir', too.
+			*
+			* Note that directories are added without the trailing '/'.
+			*/
+			do {
+				char *last_slash = strrchr(path, '/');
+
+				FLEX_ALLOC_STR(e, path, path);
+				hashmap_entry_init(&e->entry, strhash(path));
+				hashmap_add(&pathmap, &e->entry);
+
+				if (!last_slash)
+					last_slash = (char*)path;
+				*last_slash = '\0';
+
+			} while (*path);
+
+			diff_free_filepair(diff_queued_diff.queue[i]);
+		}
+
+		filter->len = (hashmap_get_size(&pathmap) * settings.bits_per_entry + BITS_PER_WORD - 1) / BITS_PER_WORD;
+		filter->data = xcalloc(filter->len, sizeof(unsigned char));
+
+		hashmap_for_each_entry(&pathmap, &iter, e, entry) {
+			struct bloom_key key;
+			fill_bloom_key(e->path, strlen(e->path), &key, &settings);
+			add_key_to_filter(&key, filter, &settings);
+		}
+
+		hashmap_free_entries(&pathmap, struct pathmap_hash_entry, entry);
+	} else {
+		for (i = 0; i < diff_queued_diff.nr; i++)
+			diff_free_filepair(diff_queued_diff.queue[i]);
+		filter->data = NULL;
+		filter->len = 0;
+	}
+
+	free(diff_queued_diff.queue);
+	DIFF_QUEUE_CLEAR(&diff_queued_diff);
+
+	return filter;
+}
+
+int bloom_filter_contains(const struct bloom_filter *filter,
+			  const struct bloom_key *key,
+			  const struct bloom_filter_settings *settings)
+{
+	int i;
+	uint64_t mod = filter->len * BITS_PER_WORD;
+
+	if (!mod)
+		return -1;
+
+	for (i = 0; i < settings->num_hashes; i++) {
+		uint64_t hash_mod = key->hashes[i] % mod;
+		uint64_t block_pos = hash_mod / BITS_PER_WORD;
+		if (!(filter->data[block_pos] & get_bitmask(hash_mod)))
+			return 0;
+	}
+
+	return 1;
+}