Merge pull request #7338 from SantaMcCloud/update_gtdb_dm

Update GTDB-Tk DM

Author: bgruening

data_managers/data_manager_gtdbtk_database_installer/data_manager/gtdbtk_database_installer.py

@@ -38,6 +38,9 @@
         "meta_ar": "https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/ar53_metadata_r226.tsv.gz",
         "meta_bac": "https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/bac120_metadata_r226.tsv.gz",
     },
+    "mocked": {
+        "full": "https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/mockup_db/mockup.tar.gz",
+    },
 }
 
 
@@ -179,7 +182,10 @@ def create_data_manager_entry(database_name, release, file_path):
     data_manager_entry["value"] = (
         f"{database_name.replace(' ', '_').lower()}_release_{release}_downloaded_{time}"
     )
-    data_manager_entry["name"] = f"{database_name} - release {release} ({time})"
+    if release == "mocked_226":
+        data_manager_entry["name"] = "Mocked GTBD DB (226)"
+    else:
+        data_manager_entry["name"] = f"{database_name} - release {release} ({time})"
     data_manager_entry["path"] = file_path
     data_manager_entry["version"] = release
     return data_manager_entry

data_managers/data_manager_gtdbtk_database_installer/data_manager/gtdbtk_database_installer.xml

@@ -2,7 +2,7 @@
     <description></description>
     <macros>
         <token name="@TOOL_VERSION@">226</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
         <token name="@PROFILE@">20.09</token>
     </macros>
     <requirements>
@@ -26,6 +26,7 @@ python '$__tool_directory__/gtdbtk_database_installer.py'
             <option value="214">214</option>
             <option value="220">220</option>
             <option value="226">226</option>
+            <option value="mocked_226">mocked DB (226)</option>
         </param>
     </inputs>
     <outputs>