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[FIX] fix tests on master branch #199

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Merged
merged 1 commit into from
May 9, 2022
Merged

[FIX] fix tests on master branch #199

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26 changes: 5 additions & 21 deletions src/readAndFilterLogfile.m
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Original file line number Diff line number Diff line change
Expand Up @@ -14,15 +14,19 @@
% :param columnName: the header of the column where the content of interest is stored
% (for example for ``trigger`` will be ``trial type``)
% :type columnName: string
%
% :param filterBy: the content of the column you want to filter out. It can take just
% part of the content name (for example, if you want to display the triggers
% and you have ``trigger_motion`` and ``trigger_static``,
% ``trigger`` as input will do)
% :type filterBy: string
%
% :param saveOutputTsv: flag to save the filtered output in a tsv file
% :type saveOutputTsv: boolean
%
% :param tsvFile: TSV file to filter
% :type tsvFile: string
%
% :param cfg: Configuration. See ``checkCFG()``. If ``cfg`` is given as input the name
% of the TSV file to read will be infered from there.
% :type cfg: structure
Expand Down Expand Up @@ -67,7 +71,7 @@
output = bids.util.tsvread(tsvFile);
end

% Get the index of the target contentent to filter and display
% Get the index of the target content to filter and display
filterIdx = strncmp(output.(columnName), filterBy, length(filterBy));

% apply the filter
Expand All @@ -76,8 +80,6 @@
output.(listFields{iField})(~filterIdx) = [];
end

output = convertStruct(output);

% Convert the structure to dataset
try
outputFiltered = struct2dataset(output);
Expand All @@ -93,21 +95,3 @@
end

end

function structure = convertStruct(structure)
% changes the structure
%
% from struct.field(i,1) to struct(i,1).field(1)

fieldsList = fieldnames(structure);
tmp = struct();

for iField = 1:numel(fieldsList)
for i = 1:numel(structure.(fieldsList{iField}))
tmp(i, 1).(fieldsList{iField}) = structure.(fieldsList{iField})(i, 1);
end
end

structure = tmp;

end