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Wrong annotation for EThCD and ETciD with last Tune v4.0 #175

@rolivella

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@rolivella

Hello

I'm having an issue with the new Tune v4.0. After processing the raw files with the last TRFP version the CID part of ETciD is lost. For instance:

<activation>
  <cvParam cvRef="MS" accession="MS:1000045" value="88.6927185058594" name="collision energy" unitAccession="UO:0000266" unitName="electronvolt" unitCvRef="UO" />
  <cvParam cvRef="MS" accession="MS:1000598" value="" name="electron transfer dissociation" />
</activation>

Another raw file but acquired with the old Tune v3.5 and the last TRFP version does not lose the CID part, has can be seen in this code:

<activation>
   <cvParam cvRef="MS" accession="MS:1000045" value="100.179542541504" name="collision energy" unitAccession="UO:0000266" unitName="electronvolt" unitCvRef="UO" />
   <cvParam cvRef="MS" accession="MS:1000598" value="" name="electron transfer dissociation" />
   <cvParam cvRef="MS" accession="MS:1002680" value="35" name="supplemental collision energy" unitAccession="UO:0000266" unitName="electronvolt" unitCvRef="UO" />
   <cvParam cvRef="MS" accession="MS:1002679" value="" name="supplemental collision-induced dissociation" />
</activation>

Could you please check? Here the mzMLs and RAWs: https://www.dropbox.com/scl/fo/06bn1v1a92xmxri1nsa36/h?rlkey=aeebgjt2ua3iuxdl58vhux4j3&dl=0

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