Exit code of 0 on conversion failure

[wholtz]

I would expect a conversion failure to result in a non-zero exit code, but I am seeing 0 in my test cases:

$ docker run -it --rm quay.io/biocontainers/thermorawfileparser:1.3.4--ha8f3691_0  ThermoRawFileParser.sh -i=/dev/null
2022-06-30 17:15:24 INFO Started parsing /dev/null
2022-06-30 17:15:24 ERROR Unable to access the RAW file using the native Thermo library.
$ echo $?
0

[caetera]

@wholtz thank you for reporting. I will make sure exit codes will be as expected.

[caetera]

In the new release 1.4.1, I have (fingers crossed) fixed error codes. Now error code indicates the number of errors during the processing. Using -w key one can include number of warnings in the error code.
I will close the issue now, feel free to reopen it, if necessary.