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MarkRobboMarkRobbo
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Fix commit ID used in test RDF file
1 parent 5afde1e commit ac24cee

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  • src/test/resources/cwl/make_to_cwl

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‎src/test/resources/cwl/make_to_cwl/dna.ttl‎

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Original file line numberDiff line numberDiff line change
@@ -22,115 +22,115 @@
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@prefix CommandLineTool: <https://w3id.org/cwl/cwl#CommandLineTool/> .
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@prefix ExpressionTool: <https://w3id.org/cwl/cwl#ExpressionTool/> .
2424

25-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#cat/sequences>
25+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#cat/sequences>
2626
sld:type [ sld:items cwl:File ;
2727
sld:type sld:array
2828
] .
2929

30-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/from>
30+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/from>
3131
sld:type xsd:string .
3232

33-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#rnaseq>
33+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#rnaseq>
3434
a cwl:CommandLineTool ;
3535
cwl:arguments ( "echo" "$(inputs.sequence)" ) ;
36-
cwl:inputs <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#rnaseq/sequence> ;
37-
cwl:outputs <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#rnaseq/seqout> ;
36+
cwl:inputs <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#rnaseq/sequence> ;
37+
cwl:outputs <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#rnaseq/seqout> ;
3838
cwl:stdout "rnaseq" .
3939

40-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#rnaseq/seqout>
40+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#rnaseq/seqout>
4141
cwl:outputBinding [ CommandOutputBinding:glob
4242
"rnaseq" ] ;
4343
sld:type cwl:File .
4444

45-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#rnaseq/sequence>
45+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#rnaseq/sequence>
4646
sld:type xsd:string .
4747

48-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#cat/catfilename>
48+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#cat/catfilename>
4949
sld:type xsd:string .
5050

51-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/from>
51+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/from>
5252
cwl:default "U" .
5353

54-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/get_sequences>
55-
cwl:in <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/get_sequences/sequence> ;
56-
cwl:out <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/get_sequences/seqout> ;
57-
cwl:run <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#rnaseq> ;
58-
cwl:scatter ( <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/get_sequences/sequence> ) .
54+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/get_sequences>
55+
cwl:in <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/get_sequences/sequence> ;
56+
cwl:out <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/get_sequences/seqout> ;
57+
cwl:run <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#rnaseq> ;
58+
cwl:scatter ( <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/get_sequences/sequence> ) .
5959

60-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/get_sequences/sequence>
61-
cwl:source <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/rna> .
60+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/get_sequences/sequence>
61+
cwl:source <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/rna> .
6262

63-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr>
63+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr>
6464
a cwl:CommandLineTool ;
6565
CommandLineTool:stdin "$(inputs.trinput.path)" ;
6666
cwl:arguments ( "tr" "$(inputs.from)" "$(inputs.to)" ) ;
67-
cwl:inputs <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/from> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/trinput> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/to> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/filename> ;
68-
cwl:outputs <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/trout> ;
67+
cwl:inputs <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/from> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/trinput> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/to> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/filename> ;
68+
cwl:outputs <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/trout> ;
6969
cwl:stdout "$(inputs.filename)" .
7070

71-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/trout>
71+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/trout>
7272
cwl:outputBinding [ CommandOutputBinding:glob
7373
"$(inputs.filename)" ] ;
7474
sld:type cwl:File .
7575

76-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/trinput>
76+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/trinput>
7777
sld:type cwl:File .
7878

79-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/to>
79+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/to>
8080
sld:type xsd:string .
8181

82-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr/filename>
82+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr/filename>
8383
sld:type xsd:string .
8484

85-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/filename>
85+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/filename>
8686
cwl:default "database.dna" .
8787

88-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/combine_sequences/catfilename>
88+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/combine_sequences/catfilename>
8989
cwl:default "database.dna" .
9090

91-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/combine_sequences>
92-
cwl:in <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/combine_sequences/catfilename> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/combine_sequences/sequences> ;
93-
cwl:out <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/combine_sequences/catout> ;
94-
cwl:run <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#cat> .
91+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/combine_sequences>
92+
cwl:in <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/combine_sequences/catfilename> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/combine_sequences/sequences> ;
93+
cwl:out <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/combine_sequences/catout> ;
94+
cwl:run <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#cat> .
9595

96-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#cat>
96+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#cat>
9797
a cwl:CommandLineTool ;
9898
cwl:arguments ( "cat" "$(inputs.sequences)" ) ;
99-
cwl:inputs <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#cat/sequences> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#cat/catfilename> ;
100-
cwl:outputs <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#cat/catout> ;
99+
cwl:inputs <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#cat/sequences> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#cat/catfilename> ;
100+
cwl:outputs <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#cat/catout> ;
101101
cwl:stdout "$(inputs.catfilename)" .
102102

103-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/combine_sequences/sequences>
104-
cwl:source <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/get_sequences/seqout> .
105-
106-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main>
103+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/combine_sequences/sequences>
104+
cwl:source <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/get_sequences/seqout> .
105+
106+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main>
107107
a cwl:Workflow ;
108-
Workflow:steps <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/get_sequences> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/combine_sequences> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences> ;
109-
cwl:inputs <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/rna> ;
110-
cwl:outputs <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/outfile> ;
108+
Workflow:steps <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/get_sequences> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/combine_sequences> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences> ;
109+
cwl:inputs <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/rna> ;
110+
cwl:outputs <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/outfile> ;
111111
cwl:requirements [ a cwl:ScatterFeatureRequirement ] .
112112

113-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/outfile>
114-
cwl:outputSource <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/trout> ;
113+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/outfile>
114+
cwl:outputSource <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/trout> ;
115115
sld:type cwl:File .
116116

117-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/rna>
117+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/rna>
118118
sld:type [ sld:items xsd:string ;
119119
sld:type sld:array
120120
] .
121121

122-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences>
123-
cwl:in <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/from> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/filename> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/trinput> , <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/to> ;
124-
cwl:out <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/trout> ;
125-
cwl:run <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#tr> .
122+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences>
123+
cwl:in <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/from> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/filename> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/trinput> , <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/to> ;
124+
cwl:out <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/trout> ;
125+
cwl:run <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#tr> .
126126

127-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/trinput>
128-
cwl:source <https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/combine_sequences/catout> .
127+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/trinput>
128+
cwl:source <https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/combine_sequences/catout> .
129129

130-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#main/translate_sequences/to>
130+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#main/translate_sequences/to>
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cwl:default "T" .
132132

133-
<https://w3id.org/cwl/view/git/3ec0d19076841a1140e71cc3a1b330a56099aac2/workflows/make-to-cwl/dna.cwl#cat/catout>
133+
<https://w3id.org/cwl/view/git/549c973ccc01781595ce562dea4cedc6c9540fe0/workflows/make-to-cwl/dna.cwl#cat/catout>
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cwl:outputBinding [ CommandOutputBinding:glob
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"$(inputs.catfilename)" ] ;
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sld:type cwl:File .

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