Update to pass CI checks

Merge branch 'master' into 41457-upgrade-to-bootstrap5

Author: calvh

.github/workflows/ci.yml

@@ -2,11 +2,13 @@ name: CI
 
 on:
   push:
-    branches: [master]
+    branches:
+      - master
   pull_request:
     branches:
       - master
       - 1.2.x
+      - 1.3.x
 
 env:
   ENV_FILE: environment.yml
@@ -20,6 +22,10 @@ jobs:
       run:
         shell: bash -l {0}
 
+    concurrency:
+      group: ${{ github.ref }}-checks
+      cancel-in-progress: true
+
     steps:
     - name: Checkout
       uses: actions/checkout@v2
@@ -93,8 +99,12 @@ jobs:
   web_and_docs:
     name: Web and docs
     runs-on: ubuntu-latest
-    steps:
 
+    concurrency:
+      group: ${{ github.ref }}-web-docs
+      cancel-in-progress: true
+
+    steps:
     - name: Checkout
       uses: actions/checkout@v2
       with:
@@ -148,8 +158,11 @@ jobs:
     strategy:
       matrix:
         pattern: ["not slow and not network and not clipboard", "slow"]
-    steps:
+    concurrency:
+      group: ${{ github.ref }}-data_manager-${{ matrix.pattern }}
+      cancel-in-progress: true
 
+    steps:
     - name: Checkout
       uses: actions/checkout@v2
       with:

.github/workflows/database.yml

@@ -2,11 +2,15 @@ name: Database
 
 on:
   push:
-    branches: [master]
+    branches:
+      - master
   pull_request:
     branches:
       - master
       - 1.2.x
+      - 1.3.x
+    paths-ignore:
+      - "doc/**"
 
 env:
   PYTEST_WORKERS: "auto"
@@ -15,17 +19,21 @@ env:
   COVERAGE: true
 
 jobs:
-  Linux_py37_IO:
+  Linux_py38_IO:
     runs-on: ubuntu-latest
     defaults:
       run:
         shell: bash -l {0}
 
     strategy:
       matrix:
-        ENV_FILE: [ci/deps/actions-37-db-min.yaml, ci/deps/actions-37-db.yaml]
+        ENV_FILE: [ci/deps/actions-38-db-min.yaml, ci/deps/actions-38-db.yaml]
       fail-fast: false
 
+    concurrency:
+      group: ${{ github.ref }}-${{ matrix.ENV_FILE }}
+      cancel-in-progress: true
+
     services:
       mysql:
         image: mysql

.github/workflows/posix.yml

@@ -2,11 +2,15 @@ name: Posix
 
 on:
   push:
-    branches: [master]
+    branches:
+      - master
   pull_request:
     branches:
       - master
       - 1.2.x
+      - 1.3.x
+    paths-ignore:
+      - "doc/**"
 
 env:
   PYTEST_WORKERS: "auto"
@@ -21,14 +25,13 @@ jobs:
     strategy:
       matrix:
         settings: [
-          [actions-37-minimum_versions.yaml, "not slow and not network and not clipboard", "", "", "", "", ""],
-          [actions-37.yaml, "not slow and not network and not clipboard", "", "", "", "", ""],
-          [actions-37-locale_slow.yaml, "slow", "language-pack-it xsel", "it_IT.utf8", "it_IT.utf8", "", ""],
-          [actions-37-slow.yaml, "slow", "", "", "", "", ""],
+          [actions-38-minimum_versions.yaml, "not slow and not network and not clipboard", "", "", "", "", ""],
+          [actions-38-locale_slow.yaml, "slow", "language-pack-it xsel", "it_IT.utf8", "it_IT.utf8", "", ""],
           [actions-38.yaml, "not slow and not network and not clipboard", "", "", "", "", ""],
           [actions-38-slow.yaml, "slow", "", "", "", "", ""],
           [actions-38-locale.yaml, "not slow and not network", "language-pack-zh-hans xsel", "zh_CN.utf8", "zh_CN.utf8", "", ""],
-          [actions-38-numpydev.yaml, "not slow and not network", "xsel", "", "", "deprecate", "-W error"],
+          [actions-39-slow.yaml, "slow", "", "", "", "", ""],
+          [actions-39-numpydev.yaml, "not slow and not network", "xsel", "", "", "deprecate", "-W error"],
           [actions-39.yaml, "not slow and not network and not clipboard", "", "", "", "", ""]
         ]
       fail-fast: false
@@ -41,6 +44,9 @@ jobs:
       LC_ALL: ${{ matrix.settings[4] }}
       PANDAS_TESTING_MODE: ${{ matrix.settings[5] }}
       TEST_ARGS: ${{ matrix.settings[6] }}
+    concurrency:
+      group: ${{ github.ref }}-${{ matrix.settings[0] }}
+      cancel-in-progress: true
 
     steps:
     - name: Checkout

.github/workflows/pre-commit.yml

@@ -3,11 +3,15 @@ name: pre-commit
 on:
   pull_request:
   push:
-    branches: [master]
+    branches:
+      - master
 
 jobs:
   pre-commit:
     runs-on: ubuntu-latest
+    concurrency:
+      group: ${{ github.ref }}-pre-commit
+      cancel-in-progress: true
     steps:
     - uses: actions/checkout@v2
     - uses: actions/setup-python@v2

.github/workflows/python-dev.yml

@@ -7,13 +7,25 @@ on:
   pull_request:
     branches:
       - master
+    paths-ignore:
+      - "doc/**"
+
+env:
+  PYTEST_WORKERS: "auto"
+  PANDAS_CI: 1
+  PATTERN: "not slow and not network and not clipboard"
+  COVERAGE: true
 
 jobs:
   build:
     runs-on: ubuntu-latest
     name: actions-310-dev
     timeout-minutes: 60
 
+    concurrency:
+      group: ${{ github.ref }}-dev
+      cancel-in-progress: true
+
     steps:
     - uses: actions/checkout@v2
       with:
@@ -30,7 +42,7 @@ jobs:
         pip install git+https://github.com/numpy/numpy.git
         pip install git+https://github.com/pytest-dev/pytest.git
         pip install git+https://github.com/nedbat/coveragepy.git
-        pip install cython python-dateutil pytz hypothesis pytest-xdist
+        pip install cython python-dateutil pytz hypothesis pytest-xdist pytest-cov
         pip list
 
     - name: Build Pandas
@@ -44,7 +56,8 @@ jobs:
 
     - name: Test with pytest
       run: |
-        coverage run -m pytest -m 'not slow and not network and not clipboard' pandas
+        ci/run_tests.sh
+      # GH 41935
       continue-on-error: true
 
     - name: Publish test results

.github/workflows/sdist.yml

@@ -0,0 +1,64 @@
+name: sdist
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+      - 1.2.x
+      - 1.3.x
+    paths-ignore:
+      - "doc/**"
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    timeout-minutes: 60
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.8", "3.9"]
+
+    steps:
+    - uses: actions/checkout@v2
+      with:
+        fetch-depth: 0
+
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip setuptools wheel
+
+        # GH 39416
+        pip install numpy
+
+    - name: Build pandas sdist
+      run: |
+        pip list
+        python setup.py sdist --formats=gztar
+
+    - uses: conda-incubator/setup-miniconda@v2
+      with:
+        activate-environment: pandas-sdist
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install pandas from sdist
+      run: |
+        conda list
+        python -m pip install dist/*.gz
+
+    - name: Import pandas
+      run: |
+        cd ..
+        conda list
+        python -c "import pandas; pandas.show_versions();"

.pre-commit-config.yaml

@@ -9,11 +9,11 @@ repos:
     -   id: absolufy-imports
         files: ^pandas/
 -   repo: https://github.com/python/black
-    rev: 20.8b1
+    rev: 21.6b0
     hooks:
     -   id: black
 -   repo: https://github.com/codespell-project/codespell
-    rev: v2.0.0
+    rev: v2.1.0
     hooks:
     -   id: codespell
         types_or: [python, rst, markdown]
@@ -53,16 +53,16 @@ repos:
         types: [text]
         args: [--append-config=flake8/cython-template.cfg]
 -   repo: https://github.com/PyCQA/isort
-    rev: 5.8.0
+    rev: 5.9.1
     hooks:
     -   id: isort
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v2.18.3
+    rev: v2.20.0
     hooks:
     -   id: pyupgrade
         args: [--py37-plus]
 -   repo: https://github.com/pre-commit/pygrep-hooks
-    rev: v1.8.0
+    rev: v1.9.0
     hooks:
       - id: rst-backticks
       - id: rst-directive-colons

MANIFEST.in

@@ -17,18 +17,19 @@ global-exclude *.h5
 global-exclude *.html
 global-exclude *.json
 global-exclude *.jsonl
+global-exclude *.msgpack
 global-exclude *.pdf
 global-exclude *.pickle
 global-exclude *.png
 global-exclude *.pptx
-global-exclude *.pyc
-global-exclude *.pyd
 global-exclude *.ods
 global-exclude *.odt
+global-exclude *.orc
 global-exclude *.sas7bdat
 global-exclude *.sav
 global-exclude *.so
 global-exclude *.xls
+global-exclude *.xlsb
 global-exclude *.xlsm
 global-exclude *.xlsx
 global-exclude *.xpt
@@ -39,6 +40,13 @@ global-exclude .DS_Store
 global-exclude .git*
 global-exclude \#*
 
+global-exclude *.c
+global-exclude *.cpp
+global-exclude *.h
+
+global-exclude *.py[ocd]
+global-exclude *.pxi
+
 # GH 39321
 # csv_dir_path fixture checks the existence of the directory
 # exclude the whole directory to avoid running related tests in sdist
@@ -47,3 +55,6 @@ prune pandas/tests/io/parser/data
 include versioneer.py
 include pandas/_version.py
 include pandas/io/formats/templates/*.tpl
+
+graft pandas/_libs/src
+graft pandas/_libs/tslibs/src

README.md

@@ -10,7 +10,6 @@
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3509134.svg)](https://doi.org/10.5281/zenodo.3509134)
 [![Package Status](https://img.shields.io/pypi/status/pandas.svg)](https://pypi.org/project/pandas/)
 [![License](https://img.shields.io/pypi/l/pandas.svg)](https://github.com/pandas-dev/pandas/blob/master/LICENSE)
-[![Travis Build Status](https://travis-ci.org/pandas-dev/pandas.svg?branch=master)](https://travis-ci.org/pandas-dev/pandas)
 [![Azure Build Status](https://dev.azure.com/pandas-dev/pandas/_apis/build/status/pandas-dev.pandas?branch=master)](https://dev.azure.com/pandas-dev/pandas/_build/latest?definitionId=1&branch=master)
 [![Coverage](https://codecov.io/github/pandas-dev/pandas/coverage.svg?branch=master)](https://codecov.io/gh/pandas-dev/pandas)
 [![Downloads](https://anaconda.org/conda-forge/pandas/badges/downloads.svg)](https://pandas.pydata.org)