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heyufan1995pre-commit-ci[bot]KumoLiu
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Update label dict (#1835)
Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Checks <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [ ] Avoid including large-size files in the PR. - [ ] Clean up long text outputs from code cells in the notebook. - [ ] For security purposes, please check the contents and remove any sensitive info such as user names and private key. - [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the `./figure` folder - [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>` --------- Signed-off-by: heyufan1995 <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: YunLiu <[email protected]>
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3d_segmentation/vista3d/NVIDIA OneWay Noncommercial License.txt renamed to vista_3d/NVIDIA OneWay Noncommercial License.txt

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vista_3d/label_dict.json

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{
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"liver": 1,
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"spleen": 3,
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"pancreas": 4,
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"right kidney": 5,
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"aorta": 6,
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"inferior vena cava": 7,
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"right adrenal gland": 8,
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"left adrenal gland": 9,
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"gallbladder": 10,
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"esophagus": 11,
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"stomach": 12,
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"duodenum": 13,
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"left kidney": 14,
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"bladder": 15,
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"portal vein and splenic vein": 17,
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"small bowel": 19,
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"brain": 22,
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"lung tumor": 23,
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"pancreatic tumor": 24,
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"hepatic vessel": 25,
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"hepatic tumor": 26,
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"colon cancer primaries": 27,
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"left lung upper lobe": 28,
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"left lung lower lobe": 29,
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"right lung upper lobe": 30,
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"right lung middle lobe": 31,
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"right lung lower lobe": 32,
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"vertebrae L5": 33,
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"vertebrae L4": 34,
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"vertebrae L3": 35,
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"vertebrae L2": 36,
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"vertebrae L1": 37,
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"vertebrae T12": 38,
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"vertebrae T11": 39,
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"vertebrae T10": 40,
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"vertebrae T9": 41,
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"vertebrae T8": 42,
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"vertebrae T7": 43,
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"vertebrae T6": 44,
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"vertebrae T5": 45,
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"vertebrae T4": 46,
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"vertebrae T3": 47,
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"vertebrae T2": 48,
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"vertebrae T1": 49,
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"vertebrae C7": 50,
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"vertebrae C6": 51,
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"vertebrae C5": 52,
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"vertebrae C4": 53,
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"vertebrae C3": 54,
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"vertebrae C2": 55,
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"vertebrae C1": 56,
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"trachea": 57,
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"left iliac artery": 58,
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"right iliac artery": 59,
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"left iliac vena": 60,
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"right iliac vena": 61,
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"colon": 62,
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"left rib 1": 63,
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"left rib 2": 64,
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"left rib 3": 65,
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"left rib 4": 66,
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"left rib 5": 67,
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"left rib 6": 68,
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"left rib 7": 69,
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"left rib 8": 70,
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"left rib 9": 71,
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"left rib 10": 72,
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"left rib 11": 73,
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"left rib 12": 74,
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"right rib 1": 75,
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"right rib 2": 76,
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"right rib 3": 77,
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"right rib 4": 78,
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"right rib 5": 79,
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"right rib 6": 80,
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"right rib 7": 81,
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"right rib 8": 82,
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"right rib 9": 83,
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"right rib 10": 84,
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"right rib 11": 85,
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"right rib 12": 86,
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"left humerus": 87,
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"right humerus": 88,
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"left scapula": 89,
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"right scapula": 90,
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"left clavicula": 91,
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"right clavicula": 92,
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"left femur": 93,
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"right femur": 94,
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"left hip": 95,
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"right hip": 96,
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"sacrum": 97,
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"left gluteus maximus": 98,
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"right gluteus maximus": 99,
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"left gluteus medius": 100,
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"right gluteus medius": 101,
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"left gluteus minimus": 102,
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"right gluteus minimus": 103,
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"left autochthon": 104,
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"right autochthon": 105,
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"left iliopsoas": 106,
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"right iliopsoas": 107,
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"left atrial appendage": 108,
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"brachiocephalic trunk": 109,
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"left brachiocephalic vein": 110,
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"right brachiocephalic vein": 111,
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"left common carotid artery": 112,
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"right common carotid artery": 113,
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"costal cartilages": 114,
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"heart": 115,
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"left kidney cyst": 116,
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"right kidney cyst": 117,
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"prostate": 118,
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"pulmonary vein": 119,
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"skull": 120,
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"spinal cord": 121,
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"sternum": 122,
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"left subclavian artery": 123,
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"right subclavian artery": 124,
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"superior vena cava": 125,
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"thyroid gland": 126,
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"vertebrae S1": 127,
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"bone lesion": 128,
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"airway": 132
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}

3d_segmentation/vista3d/vista3d_spleen_finetune.ipynb renamed to vista_3d/vista3d_spleen_finetune.ipynb

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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"## Define Dataset finetuning setting. Checkout the label mapping index in [label_dict](https://github.com/Project-MONAI/VISTA/blob/main/vista3d/data/jsons/label_dict.json)"
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"## Define Dataset finetuning setting. Checkout the label mapping index in [label_dict](./label_dict.json)"
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]
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},
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{

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