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designUX or presentation needs attentionUX or presentation needs attentiondocumentationImprovements or additions to documentationImprovements or additions to documentationstructureRefactoring or architecture, general code organizationRefactoring or architecture, general code organization
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General Process/Tasks Outline
- Rename to Collaborative-distributed-science-guide
- ALL links must point to new repo name location (e.g., questions comments and concerns at bottom of page, etc.)
- These should be identified and identifiable for reuse—can this be encoded with a config? Otherwise find and replace through codebase.
- ALL links must point to new repo name location (e.g., questions comments and concerns at bottom of page, etc.)
- Add comments at personalization points (eg., logos, title, etc)
- Specific files to update and guidance should be provided in the
README
as well
- Specific files to update and guidance should be provided in the
- Set shared logo
- Make shared code of conduct: combine the Code of Conduct (i.e., replace each instance of "Imageomics" with "Imageomics and ABC" or "Imageomics or ABC" as appropriate, since this is a shared space and the Code of Conduct for both are the same)
- Update homepage:
- To have logo location with single shared logo? (
<Organization> Branding (Logos)
orImageomics-ABC Branding (Logos)
, could include one of each?) - Explain background/history (as it does now up to generalization as base repo/template).
- Collaborative Infrastructure We Use section—have both Institute and Center Code repositories (where Institute and Center get URLs)?
- To have logo location with single shared logo? (
- Update citation with new name, v2.0.0, include Net, Graham, and Iuliia.
- Generate DOI on Zenodo for the Collaborative-distributed-science-guide through the GH integration (change name prior to release).
- Recommend adding the template/base repo as reference in
CITATION.cff
for forks? —We will do this for the Imageomics-guide and the ABC-guide- Shared Imageomics & ABC grant acknowledgment will be added to the repo
README
, as each site will just have its own acknowledgement in the footer. - Do we want to indicate our shared source repo on the websites themselves in some way (i.e., in the footer)?
- Shared Imageomics & ABC grant acknowledgment will be added to the repo
- Add Imageomics-guide tag in repo before generalization point
- To-Do before generalization point:
- Add in FAIR Guide section with checklists (PR Add FAIR Guide with Checklists #37)
- Two bug fixes (Update
.zendo.json
instructions/references #14 & gh-pages branch protection rules in conflict with PR merge rules #21)
Proposed Method
The Imageomics-Guide needs to stay up during this process, so I propose the creation of a dev
branch to work on the generalization. We will treat it as we do main
, setting up branch protections and following the PR process to make the changes outlined above.
Specifically, I propose creating this new branch after merging PR #37, at which point I will add a tag to the commit. Once all changes are completed, rename and release has occurred, we will then create Imageomics-guide and ABC-guide forks on the respective GH Orgs to get the specific guides up and running.
Changes as follows:
- Replace all instances of "Imageomics-guide" with "Collaborative-distributed-science-guide" (equiv. "Imageomics Guide" --> "Collaborative Distributed Science Guide").
- URLs and descriptions
- Most URLs are relative links, but we have "Questions, Comments, Concerns"
- Set shared logo in
mkdocs.yaml
-
README
: keep existing info with name update and add the following- Combined grant acknowledgement
- Indicate which files should be updated/personalized (include comments in those files where appropriate, e.g.,
mkdocs.yaml
title, logo, etc.) - Add any other information about suggested citation or acknowledgement---does this go into website somehow? The Imageomics and ABC guides will be a model, but good to be explicit in the
README
about what to do with this.
- Website homepage (
docs/index.md
):- Include links to both Imageomics and ABC collaborative infrastructure: "Imageomics and ABC Code Repositories" and "Imageomics and ABC Organization Pages"
- Is there a desire to edit or remove the collaborative infrastructure diagram?
- For the logos, do we want to have a single shared logo? (
<Organization> Branding (Logos)
orImageomics-ABC Branding (Logos)
, could include one of each?)
- Why use the Institute GH & HF pages can both be changed to "why use our organization GH/HF" (alternatively, "the organization"), italics used to highlight difference only.
- Code of Conduct will be combined (i.e., replace each instance of "Imageomics" with "Imageomics and ABC" or "Imageomics or ABC" as appropriate).
- Update
CITATION.cff
to include Net, Iuliia, and Graham, will bev2.0.0v1.0.0 on release---Imageomics Guide will go to v2.0.0. - Add Digital Product Policies + landing page (explain as Imageomics versions, useful as template).
- Push
dev
branch to new Imageomics/Collaborative-distributed-science-guide repo. - Revert all changes back to Imageomics-specific (still on
dev
), include also:- Removing ABC templates
- Set acknowledgement back to just Imageomics grant in footer.
- Update
CONTRIBUTING.md
to be just for Imageomics Guide and possibly include pointer to template for general updates.
Pages that have Imageomics-specific aspects to leave as they are:
- Digital Products Release Licensing Policy
- templates pages--have both Imageomics & ABC
- Infrastructure
- Glossary
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designUX or presentation needs attentionUX or presentation needs attentiondocumentationImprovements or additions to documentationImprovements or additions to documentationstructureRefactoring or architecture, general code organizationRefactoring or architecture, general code organization