feat: visualize well intersection in geos-trame

[lucas-givord]

This PR add intersection capability in geos-trame when a user want to display a well and a perforation (part of #85)

The DeckViewer has been improved to control well and perforation radius with slider widgets.

Preview of the 3DView with few perforation and well

close #86

[mlemayTTE]

@lucas-givord geos-trame install works but when running geos-trame it seems the directory "geos-trame/src/geos_trame/module/serve" is missing. This directory was present in the previous delivery of geos-trame.

geos-trame -I PATH/TO/GEOS_DECK.xml
VCard.water_x is missing
Traceback (most recent call last):
  File "<ROOT>/.venv/lib/python3.11/site-packages/aiohttp/web_urldispatcher.py", line 564, in __init__
    directory = Path(directory).expanduser().resolve(strict=True)
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<PYTHON_PATH>/Python-3.11.11/lib/python3.11/pathlib.py", line 993, in resolve
    s = os.path.realpath(self, strict=strict)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen posixpath>", line 416, in realpath
  File "<frozen posixpath>", line 451, in _joinrealpath
FileNotFoundError: [Errno 2] No such file or directory: '<ROOT>/geos-trame/src/geos_trame/module/serve'

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "<ROOT>/.venv/bin/geos-trame", line 8, in <module>
    sys.exit(main())
             ^^^^^^
  File "<ROOT>/geos-trame/src/geos_trame/app/__main__.py", line 35, in main
    app.server.start( **kwargs )
  File "<ROOT>/.venv/lib/python3.11/site-packages/trame_server/core.py", line 687, in start
    task = CoreServer.server_start(
           ^^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/trame_server/protocol.py", line 50, in server_start
    return server.start_webserver(
           ^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/wslink/server.py", line 258, in start_webserver
    ws_server = create_webserver(server_config, backend=backend)
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/wslink/server.py", line 168, in create_webserver
    return backends.create_webserver(server_config, backend=backend)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/wslink/backends/__init__.py", line 5, in create_webserver
    return create_webserver(server_config)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/wslink/backends/aiohttp/__init__.py", line 211, in create_webserver
    return WebAppServer(server_config)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/wslink/backends/aiohttp/__init__.py", line 109, in __init__
    self.app.add_routes(routes)
  File "<ROOT>/.venv/lib/python3.11/site-packages/aiohttp/web_app.py", line 389, in add_routes
    return self.router.add_routes(routes)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/aiohttp/web_urldispatcher.py", line 1281, in add_routes
    registered_routes.extend(route_def.register(self))
                             ^^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/aiohttp/web_routedef.py", line 98, in register
    resource = router.add_static(self.prefix, self.path, **self.kwargs)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/aiohttp/web_urldispatcher.py", line 1205, in add_static
    resource = StaticResource(
               ^^^^^^^^^^^^^^^
  File "<ROOT>/.venv/lib/python3.11/site-packages/aiohttp/web_urldispatcher.py", line 566, in __init__
    raise ValueError(f"'{directory}' does not exist") from error
ValueError: '<ROOT>/geos-trame/src/geos_trame/module/serve' does not exist

[lucas-givord]

@mlemayTTE geos_trame/module/serve folder is generated by npm, I believe you need to follow the Build and install the Vue components step. Let me know if it fixed the issue, otherwise I will check and update the README.

[mlemayTTE]

@lucas-givord ok following the README.md, the geos_trame/module/serve folder is generated, and I can launch trame.

[lucas-givord]

@mlemayTTE could you please review and test it?

[mlemayTTE]

Ok for me ! @alexbenedicto could you merge this PR when you have some time?
By now Trame is independant from the other packages, but we will work on mutualizing functions in the future.

[alexbenedicto]

We need to use git-lfs for this

[lucas-givord]

I can't push this .vtu file, it seems that this repository reached is limit with lfs:

batch response: This repository exceeded its LFS budget. The account responsible for the budget should increase it to restore access.

[lucas-givord]

I have modified my test and the associated deck to not have to push this vtu (I reuse the .vtu from another test). Let me know if I need to modify something else