diff --git a/.Rbuildignore b/.Rbuildignore
index dbde8f70f3..1760e864ca 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -27,3 +27,4 @@ visual_test
^cran-comments\.md$
^LICENSE\.md$
^vignettes/articles$
+^CRAN-SUBMISSION$
diff --git a/DESCRIPTION b/DESCRIPTION
index c327980b14..ae611679df 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
Package: ggplot2
+Version: 3.3.6.9000
Title: Create Elegant Data Visualisations Using the Grammar of Graphics
-Version: 3.3.5.9000
Authors@R: c(
person("Hadley", "Wickham", , "hadley@rstudio.com", role = "aut",
comment = c(ORCID = "0000-0003-4757-117X")),
diff --git a/NEWS.md b/NEWS.md
index e418b1bb8e..d3dfb7fd0a 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -89,7 +89,12 @@ precedence between `bins` and `binwidth`. (@eliocamp, #4651)
`geom_linerange()` are now orientation-aware (@mjskay, #4732)
* Updated documentation for `geom_smooth()` to more clearly describe effects of the
- `fullrange` parameter (@thoolihan, #4399).
+ `fullrange` parameter (@thoolihan, #4399).
+
+# ggplot2 3.3.6
+This is a very small release only applying an internal change to comply with
+R 4.2 and its deprecation of `default.stringsAsFactors()`. There are no user
+facing changes and no breaking changes.
# ggplot2 3.3.5
This is a very small release focusing on fixing a couple of untenable issues
diff --git a/cran-comments.md b/cran-comments.md
index c205ecc5c0..24e9b543d4 100644
--- a/cran-comments.md
+++ b/cran-comments.md
@@ -1,7 +1,36 @@
-This is a very quick patch release addressing some unforeseen issues with the
-latest release. It does not contain any breaking changes and no changes to worse
-in the reverse dependencies was detected.
+This is a small release as requested by CRAN to remove a call to the deprecated
+`default.stringsAsFactors()` in base. This patch contains no user facing changes
+and no breaking changes.
## R CMD check results
0 errors | 0 warnings | 0 note
+
+## revdepcheck results
+
+We checked 3967 reverse dependencies, comparing R CMD check results across CRAN
+and dev versions of this package.
+
+ * We saw 2 new problems
+ * We failed to check 6 packages
+
+Issues with CRAN packages are summarised below. Looking into the 2 problems,
+none of them are related to ggplot2.
+
+### New problems
+(This reports the first line of each new failure)
+
+* eurlex
+ checking re-building of vignette outputs ... WARNING
+
+* gggrid
+ checking re-building of vignette outputs ... WARNING
+
+### Failed to check
+
+* CausalImpact (NA)
+* ctsem (NA)
+* loon.ggplot (NA)
+* SSVS (NA)
+* valse (NA)
+* vivid (NA)
diff --git a/revdep/README.md b/revdep/README.md
index 8f74a75cd0..9796d007a4 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,58 +1,20 @@
# Revdeps
-## Failed to check (45)
+## Failed to check (6)
-|package |version |error |warning |note |
-|:----------------|:-------|:-----|:-------|:----|
-|ActivePathways |? | | | |
-|apc |? | | | |
-|apisensr |? | | | |
-|backShift |? | | | |
-|bayesdfa |1.1.0 |1 | | |
-|bayesZIB |0.0.2 |1 | | |
-|NA |? | | | |
-|NA |? | | | |
-|btergm |1.9.13 |1 | | |
-|CausalImpact |? | | | |
-|CB2 |? | | | |
-|cbar |? | | | |
-|NA |? | | | |
-|dfpk |3.5.1 |1 | | |
-|diceR |? | | | |
-|GenHMM1d |? | | | |
-|ggmsa |? | | | |
-|ggtern |3.3.0 |1 | |1 |
-|glmmfields |0.1.4 |1 | | |
-|NA |? | | | |
-|mcmcabn |? | | | |
-|NA |? | | | |
-|metagam |? | | | |
-|MoMPCA |? | | | |
-|osmplotr |? | | | |
-|pcalg |? | | | |
-|penaltyLearning |? | | | |
-|phylopath |? | | | |
-|NA |? | | | |
-|rabhit |? | | | |
-|raw |? | | | |
-|rstap |1.0.3 |1 | | |
-|scoper |? | | | |
-|spectralAnalysis |? | | | |
-|NA |? | | | |
-|StroupGLMM |? | | | |
-|superb |? | | | |
-|SynthETIC |? | | | |
-|NA |? | | | |
-|tigger |? | | | |
-|trackr |? | | | |
-|valse |0.1-0 |1 | | |
-|vivid |? | | | |
-|wrswoR |? | | | |
-|zenplots |? | | | |
+|package |version |error |warning |note |
+|:------------|:-------|:-----|:-------|:----|
+|CausalImpact |? | | | |
+|ctsem |3.6.0 |1 | | |
+|loon.ggplot |? | | | |
+|SSVS |? | | | |
+|valse |0.1-0 |1 | | |
+|vivid |? | | | |
-## New problems (1)
+## New problems (2)
-|package |version |error |warning |note |
-|:----------------------------------------|:---------|:-----|:-------|:------|
-|[rvinecopulib](problems.md#rvinecopulib) |0.5.5.1.1 |-1 | |__+1__ |
+|package |version |error |warning |note |
+|:----------------------------|:-------|:-----|:-------|:----|
+|[eurlex](problems.md#eurlex) |0.4.1 | |__+1__ | |
+|[gggrid](problems.md#gggrid) |0.2-0 | |__+1__ | |
diff --git a/revdep/cran.md b/revdep/cran.md
index 5b78fa18c9..1c68c8332a 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,54 +1,26 @@
## revdepcheck results
-We checked 3197 reverse dependencies (3189 from CRAN + 8 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 3967 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
- * We saw 1 new problems
- * We failed to check 37 packages
+ * We saw 2 new problems
+ * We failed to check 6 packages
Issues with CRAN packages are summarised below.
### New problems
(This reports the first line of each new failure)
-* rvinecopulib
- checking installed package size ... NOTE
+* eurlex
+ checking re-building of vignette outputs ... WARNING
+
+* gggrid
+ checking re-building of vignette outputs ... WARNING
### Failed to check
-* ActivePathways (NA)
-* apc (NA)
-* apisensr (NA)
-* backShift (NA)
-* bayesdfa (NA)
-* bayesZIB (NA)
-* btergm (NA)
-* CausalImpact (NA)
-* CB2 (NA)
-* cbar (NA)
-* dfpk (NA)
-* diceR (NA)
-* GenHMM1d (NA)
-* ggmsa (NA)
-* ggtern (NA)
-* glmmfields (NA)
-* mcmcabn (NA)
-* metagam (NA)
-* MoMPCA (NA)
-* osmplotr (NA)
-* pcalg (NA)
-* penaltyLearning (NA)
-* phylopath (NA)
-* rabhit (NA)
-* raw (NA)
-* rstap (NA)
-* scoper (NA)
-* spectralAnalysis (NA)
-* StroupGLMM (NA)
-* superb (NA)
-* SynthETIC (NA)
-* tigger (NA)
-* trackr (NA)
-* valse (NA)
-* vivid (NA)
-* wrswoR (NA)
-* zenplots (NA)
+* CausalImpact (NA)
+* ctsem (NA)
+* loon.ggplot (NA)
+* SSVS (NA)
+* valse (NA)
+* vivid (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index 8757d9517a..d52483d496 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -1,2186 +1,14 @@
-# ActivePathways
-
-
-
-* Version: 1.0.2
-* GitHub: https://github.com/reimandlab/ActivePathways
-* Source code: https://github.com/cran/ActivePathways
-* Date/Publication: 2020-07-09 17:20:02 UTC
-* Number of recursive dependencies: 88
-
-Run `cloud_details(, "ActivePathways")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/ActivePathways/new/ActivePathways.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘ActivePathways/DESCRIPTION’ ... OK
-* this is package ‘ActivePathways’ version ‘1.0.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ]
- Error: Test failures
- Execution halted
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘ActivePathways-vignette.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 1 ERROR, 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/ActivePathways/old/ActivePathways.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘ActivePathways/DESCRIPTION’ ... OK
-* this is package ‘ActivePathways’ version ‘1.0.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 70 ]
- Error: Test failures
- Execution halted
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘ActivePathways-vignette.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 1 ERROR, 1 NOTE
-
-
-
-
-
-```
-# apc
-
-
-
-* Version: 2.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/apc
-* Date/Publication: 2020-10-01 23:20:06 UTC
-* Number of recursive dependencies: 113
-
-Run `cloud_details(, "apc")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/apc/new/apc.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘apc/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘apc’ version ‘2.0.0’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ChainLadder’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/apc/old/apc.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘apc/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘apc’ version ‘2.0.0’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ChainLadder’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# apisensr
-
-
-
-* Version: 0.3.0
-* GitHub: https://github.com/dhaine/apisensr
-* Source code: https://github.com/cran/apisensr
-* Date/Publication: 2021-03-15 11:20:09 UTC
-* Number of recursive dependencies: 128
-
-Run `cloud_details(, "apisensr")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/apisensr/new/apisensr.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘apisensr/DESCRIPTION’ ... OK
-* this is package ‘apisensr’ version ‘0.3.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘episensr’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/apisensr/old/apisensr.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘apisensr/DESCRIPTION’ ... OK
-* this is package ‘apisensr’ version ‘0.3.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘episensr’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# backShift
-
-
-
-* Version: 0.1.4.3
-* GitHub: https://github.com/christinaheinze/backShift
-* Source code: https://github.com/cran/backShift
-* Date/Publication: 2020-05-06 11:30:03 UTC
-* Number of recursive dependencies: 89
-
-Run `cloud_details(, "backShift")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/backShift/new/backShift.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘backShift/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘backShift’ version ‘0.1.4.3’
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘exampleBackShift.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 2 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/backShift/old/backShift.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘backShift/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘backShift’ version ‘0.1.4.3’
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘exampleBackShift.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 2 NOTEs
-
-
-
-
-
-```
-# bayesdfa
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/fate-ewi/bayesdfa
-* Source code: https://github.com/cran/bayesdfa
-* Date/Publication: 2021-05-28 18:10:05 UTC
-* Number of recursive dependencies: 81
-
-Run `cloud_details(, "bayesdfa")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bayesdfa’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bayesdfa’ ...
-** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-
-
-g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30,
-...
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stanExports_dfa.o] Error 1
-ERROR: compilation failed for package ‘bayesdfa’
-* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bayesdfa’ ...
-** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-
-
-g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.0.3/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30,
-...
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stanExports_dfa.o] Error 1
-ERROR: compilation failed for package ‘bayesdfa’
-* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’
-
-
-```
-# bayesZIB
-
-
-
-* Version: 0.0.2
-* GitHub: NA
-* Source code: https://github.com/cran/bayesZIB
-* Date/Publication: 2021-05-26 09:50:02 UTC
-* Number of recursive dependencies: 53
-
-Run `cloud_details(, "bayesZIB")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bayesZIB’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bayesZIB/new/bayesZIB.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bayesZIB’ ...
-** package ‘bayesZIB’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(name) : there is no package called ‘rstantools’
-Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘bayesZIB’
-* removing ‘/tmp/workdir/bayesZIB/new/bayesZIB.Rcheck/bayesZIB’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bayesZIB’ ...
-** package ‘bayesZIB’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(name) : there is no package called ‘rstantools’
-Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘bayesZIB’
-* removing ‘/tmp/workdir/bayesZIB/old/bayesZIB.Rcheck/bayesZIB’
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# btergm
-
-
-
-* Version: 1.9.13
-* GitHub: https://github.com/leifeld/btergm
-* Source code: https://github.com/cran/btergm
-* Date/Publication: 2020-10-26 14:30:02 UTC
-* Number of recursive dependencies: 75
-
-Run `cloud_details(, "btergm")` for more info
-
-
-
-## In both
-
-* checking whether package ‘btergm’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/btergm/new/btergm.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘btergm’ ...
-** package ‘btergm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘ergm.Cprepare’ is not exported by 'namespace:ergm'
-Execution halted
-ERROR: lazy loading failed for package ‘btergm’
-* removing ‘/tmp/workdir/btergm/new/btergm.Rcheck/btergm’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘btergm’ ...
-** package ‘btergm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘ergm.Cprepare’ is not exported by 'namespace:ergm'
-Execution halted
-ERROR: lazy loading failed for package ‘btergm’
-* removing ‘/tmp/workdir/btergm/old/btergm.Rcheck/btergm’
-
-
-```
-# CausalImpact
-
-
-
-* Version: 1.2.7
-* GitHub: NA
-* Source code: https://github.com/cran/CausalImpact
-* Date/Publication: 2021-06-07 06:40:02 UTC
-* Number of recursive dependencies: 68
-
-Run `cloud_details(, "CausalImpact")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
-* this is package ‘CausalImpact’ version ‘1.2.7’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'bsts', 'Boom'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
-* this is package ‘CausalImpact’ version ‘1.2.7’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'bsts', 'Boom'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# CB2
-
-
-
-* Version: 1.3.4
-* GitHub: NA
-* Source code: https://github.com/cran/CB2
-* Date/Publication: 2020-07-24 09:42:24 UTC
-* Number of recursive dependencies: 100
-
-Run `cloud_details(, "CB2")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/CB2/new/CB2.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘CB2/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘CB2’ version ‘1.3.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘metap’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/CB2/old/CB2.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘CB2/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘CB2’ version ‘1.3.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘metap’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# cbar
-
-
-
-* Version: 0.1.3
-* GitHub: https://github.com/zedoul/cbar
-* Source code: https://github.com/cran/cbar
-* Date/Publication: 2017-10-24 13:20:22 UTC
-* Number of recursive dependencies: 63
-
-Run `cloud_details(, "cbar")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/cbar/new/cbar.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘cbar/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘cbar’ version ‘0.1.3’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'Boom', 'bsts'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/cbar/old/cbar.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘cbar/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘cbar’ version ‘0.1.3’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'Boom', 'bsts'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# dfpk
-
-
-
-* Version: 3.5.1
-* GitHub: https://github.com/artemis-toumazi/dfpk
-* Source code: https://github.com/cran/dfpk
-* Date/Publication: 2018-11-09 15:20:06 UTC
-* Number of recursive dependencies: 55
-
-Run `cloud_details(, "dfpk")` for more info
-
-
-
-## In both
-
-* checking whether package ‘dfpk’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/dfpk/new/dfpk.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘dfpk’ ...
-** package ‘dfpk’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-
-
-g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Modules.cpp -o Modules.o
-In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
-...
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_reg_auc_namespace::model_reg_auc; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:181: Modules.o] Error 1
-ERROR: compilation failed for package ‘dfpk’
-* removing ‘/tmp/workdir/dfpk/new/dfpk.Rcheck/dfpk’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘dfpk’ ...
-** package ‘dfpk’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-
-
-g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Modules.cpp -o Modules.o
-In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
-...
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_reg_auc_namespace::model_reg_auc; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:181: Modules.o] Error 1
-ERROR: compilation failed for package ‘dfpk’
-* removing ‘/tmp/workdir/dfpk/old/dfpk.Rcheck/dfpk’
-
-
-```
-# diceR
-
-
-
-* Version: 1.0.4
-* GitHub: https://github.com/AlineTalhouk/diceR
-* Source code: https://github.com/cran/diceR
-* Date/Publication: 2021-06-04 08:30:02 UTC
-* Number of recursive dependencies: 146
-
-Run `cloud_details(, "diceR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/diceR/new/diceR.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘diceR/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘diceR’ version ‘1.0.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘NMF’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/diceR/old/diceR.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘diceR/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘diceR’ version ‘1.0.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘NMF’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# GenHMM1d
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/GenHMM1d
-* Date/Publication: 2021-01-21 08:20:03 UTC
-* Number of recursive dependencies: 78
-
-Run `cloud_details(, "GenHMM1d")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/GenHMM1d/new/GenHMM1d.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘GenHMM1d/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘GenHMM1d’ version ‘0.1.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'actuar', 'ssdtools'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/GenHMM1d/old/GenHMM1d.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘GenHMM1d/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘GenHMM1d’ version ‘0.1.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'actuar', 'ssdtools'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# ggmsa
-
-
-
-* Version: 0.0.6
-* GitHub: NA
-* Source code: https://github.com/cran/ggmsa
-* Date/Publication: 2021-02-02 10:10:07 UTC
-* Number of recursive dependencies: 74
-
-Run `cloud_details(, "ggmsa")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/ggmsa/new/ggmsa.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘ggmsa/DESCRIPTION’ ... OK
-* this is package ‘ggmsa’ version ‘0.0.6’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘Biostrings’
-
-Packages suggested but not available for checking: 'ggtree', 'seqmagick'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/ggmsa/old/ggmsa.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘ggmsa/DESCRIPTION’ ... OK
-* this is package ‘ggmsa’ version ‘0.0.6’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘Biostrings’
-
-Packages suggested but not available for checking: 'ggtree', 'seqmagick'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# ggtern
-
-
-
-* Version: 3.3.0
-* GitHub: NA
-* Source code: https://github.com/cran/ggtern
-* Date/Publication: 2020-04-11 14:50:05 UTC
-* Number of recursive dependencies: 45
-
-Run `cloud_details(, "ggtern")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ggtern’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package which this enhances but not available for checking: ‘sp’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ggtern’ ...
-** package ‘ggtern’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** demo
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'try_require' not found
-Error: unable to load R code in package ‘ggtern’
-Execution halted
-ERROR: lazy loading failed for package ‘ggtern’
-* removing ‘/tmp/workdir/ggtern/new/ggtern.Rcheck/ggtern’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ggtern’ ...
-** package ‘ggtern’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** demo
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'try_require' not found
-Error: unable to load R code in package ‘ggtern’
-Execution halted
-ERROR: lazy loading failed for package ‘ggtern’
-* removing ‘/tmp/workdir/ggtern/old/ggtern.Rcheck/ggtern’
-
-
-```
-# glmmfields
-
-
-
-* Version: 0.1.4
-* GitHub: https://github.com/seananderson/glmmfields
-* Source code: https://github.com/cran/glmmfields
-* Date/Publication: 2020-07-09 05:50:03 UTC
-* Number of recursive dependencies: 95
-
-Run `cloud_details(, "glmmfields")` for more info
-
-
-
-## In both
-
-* checking whether package ‘glmmfields’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/glmmfields/new/glmmfields.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘glmmfields’ ...
-** package ‘glmmfields’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/glmmfields.stan
-Wrote C++ file "stan_files/glmmfields.cc"
-
-
-g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -fpic -g -O2 -c stan_files/glmmfields.cc -o stan_files/glmmfields.o
-In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
-...
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_glmmfields_namespace::model_glmmfields; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/glmmfields.o] Error 1
-rm stan_files/glmmfields.cc
-ERROR: compilation failed for package ‘glmmfields’
-* removing ‘/tmp/workdir/glmmfields/new/glmmfields.Rcheck/glmmfields’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘glmmfields’ ...
-** package ‘glmmfields’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/glmmfields.stan
-Wrote C++ file "stan_files/glmmfields.cc"
-
-
-g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I/usr/local/include -fpic -g -O2 -c stan_files/glmmfields.cc -o stan_files/glmmfields.o
-In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
-...
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_glmmfields_namespace::model_glmmfields; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/glmmfields.o] Error 1
-rm stan_files/glmmfields.cc
-ERROR: compilation failed for package ‘glmmfields’
-* removing ‘/tmp/workdir/glmmfields/old/glmmfields.Rcheck/glmmfields’
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# mcmcabn
-
-
-
-* Version: 0.4
-* GitHub: NA
-* Source code: https://github.com/cran/mcmcabn
-* Date/Publication: 2021-06-02 06:10:01 UTC
-* Number of recursive dependencies: 132
-
-Run `cloud_details(, "mcmcabn")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/mcmcabn/new/mcmcabn.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘mcmcabn/DESCRIPTION’ ... OK
-* this is package ‘mcmcabn’ version ‘0.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'gRbase', 'abn'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/mcmcabn/old/mcmcabn.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘mcmcabn/DESCRIPTION’ ... OK
-* this is package ‘mcmcabn’ version ‘0.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'gRbase', 'abn'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# metagam
-
-
-
-* Version: 0.2.0
-* GitHub: https://github.com/Lifebrain/metagam
-* Source code: https://github.com/cran/metagam
-* Date/Publication: 2020-11-12 08:10:02 UTC
-* Number of recursive dependencies: 145
-
-Run `cloud_details(, "metagam")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/metagam/new/metagam.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘metagam/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘metagam’ version ‘0.2.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘metap’
-
-Package suggested but not available for checking: ‘multtest’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/metagam/old/metagam.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘metagam/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘metagam’ version ‘0.2.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘metap’
-
-Package suggested but not available for checking: ‘multtest’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# MoMPCA
-
-
-
-* Version: 1.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/MoMPCA
-* Date/Publication: 2021-01-21 13:10:03 UTC
-* Number of recursive dependencies: 82
-
-Run `cloud_details(, "MoMPCA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/MoMPCA/old/MoMPCA.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘MoMPCA/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘MoMPCA’ version ‘1.0.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
- Error: package or namespace load failed for ‘utils’:
- .onLoad failed in loadNamespace() for 'utils', details:
- call: system("uname -a", intern = TRUE)
- error: cannot popen 'uname -a', probable reason 'Cannot allocate memory'
- internal error -3 in R_decompress1
- 3: package ‘stats’ in options("defaultPackages") was not found
- Killed
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ...
-
-
-
-
-
-```
-# osmplotr
-
-
-
-* Version: 0.3.3
-* GitHub: https://github.com/ropensci/osmplotr
-* Source code: https://github.com/cran/osmplotr
-* Date/Publication: 2021-03-28 00:10:03 UTC
-* Number of recursive dependencies: 94
-
-Run `cloud_details(, "osmplotr")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/osmplotr/new/osmplotr.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘osmplotr/DESCRIPTION’ ... OK
-* this is package ‘osmplotr’ version ‘0.3.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ggm’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/osmplotr/old/osmplotr.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘osmplotr/DESCRIPTION’ ... OK
-* this is package ‘osmplotr’ version ‘0.3.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ggm’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# pcalg
-
-
-
-* Version: 2.7-3
-* GitHub: NA
-* Source code: https://github.com/cran/pcalg
-* Date/Publication: 2021-06-01 08:30:02 UTC
-* Number of recursive dependencies: 60
-
-Run `cloud_details(, "pcalg")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/pcalg/new/pcalg.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘pcalg/DESCRIPTION’ ... OK
-* this is package ‘pcalg’ version ‘2.7-3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'graph', 'RBGL', 'ggm'
-
-Package suggested but not available for checking: ‘Rgraphviz’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/pcalg/old/pcalg.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘pcalg/DESCRIPTION’ ... OK
-* this is package ‘pcalg’ version ‘2.7-3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'graph', 'RBGL', 'ggm'
-
-Package suggested but not available for checking: ‘Rgraphviz’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# penaltyLearning
-
-
-
-* Version: 2020.5.13
-* GitHub: https://github.com/tdhock/penaltyLearning
-* Source code: https://github.com/cran/penaltyLearning
-* Date/Publication: 2020-05-14 16:20:02 UTC
-* Number of recursive dependencies: 60
-
-Run `cloud_details(, "penaltyLearning")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/penaltyLearning/new/penaltyLearning.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘penaltyLearning/DESCRIPTION’ ... OK
-* this is package ‘penaltyLearning’ version ‘2020.5.13’
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-Package suggested but not available for checking: ‘jointseg’
-...
-* checking for GNU extensions in Makefiles ... OK
-* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
-* checking use of PKG_*FLAGS in Makefiles ... OK
-* checking compiled code ... OK
-* checking examples ... OK
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/penaltyLearning/old/penaltyLearning.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘penaltyLearning/DESCRIPTION’ ... OK
-* this is package ‘penaltyLearning’ version ‘2020.5.13’
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-Package suggested but not available for checking: ‘jointseg’
-...
-* checking for GNU extensions in Makefiles ... OK
-* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
-* checking use of PKG_*FLAGS in Makefiles ... OK
-* checking compiled code ... OK
-* checking examples ... OK
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-# phylopath
-
-
-
-* Version: 1.1.2
-* GitHub: https://github.com/Ax3man/phylopath
-* Source code: https://github.com/cran/phylopath
-* Date/Publication: 2019-12-07 01:10:07 UTC
-* Number of recursive dependencies: 90
-
-Run `cloud_details(, "phylopath")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/phylopath/new/phylopath.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘phylopath/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘phylopath’ version ‘1.1.2’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ggm’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/phylopath/old/phylopath.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘phylopath/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘phylopath’ version ‘1.1.2’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ggm’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# rabhit
-
-
-
-* Version: 0.1.5
-* GitHub: NA
-* Source code: https://github.com/cran/rabhit
-* Date/Publication: 2020-07-11 22:40:02 UTC
-* Number of recursive dependencies: 123
-
-Run `cloud_details(, "rabhit")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/rabhit/new/rabhit.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘rabhit/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘rabhit’ version ‘0.1.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'alakazam', 'tigger'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/rabhit/old/rabhit.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘rabhit/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘rabhit’ version ‘0.1.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'alakazam', 'tigger'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# raw
-
-
-
-* Version: 0.1.8
-* GitHub: NA
-* Source code: https://github.com/cran/raw
-* Date/Publication: 2021-02-05 15:40:03 UTC
-* Number of recursive dependencies: 160
-
-Run `cloud_details(, "raw")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/raw/new/raw.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘raw/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘raw’ version ‘0.1.8’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘raw.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/raw/old/raw.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘raw/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘raw’ version ‘0.1.8’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘raw.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-# rstap
-
-
-
-* Version: 1.0.3
-* GitHub: https://github.com/biostatistics4socialimpact/rstap
-* Source code: https://github.com/cran/rstap
-* Date/Publication: 2019-02-06 20:30:03 UTC
-* Number of recursive dependencies: 110
-
-Run `cloud_details(, "rstap")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rstap’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rstap/new/rstap.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rstap’ ...
-** package ‘rstap’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/stap_binomial.stan
-Wrote C++ file "stan_files/stap_binomial.cc"
-g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"`"/opt/R/4.0.3/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c stan_files/stap_binomial.cc -o stan_files/stap_binomial.o
-In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
-...
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_stap_binomial_namespace::model_stap_binomial; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/stap_binomial.o] Error 1
-rm stan_files/stap_binomial.cc
-ERROR: compilation failed for package ‘rstap’
-* removing ‘/tmp/workdir/rstap/new/rstap.Rcheck/rstap’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rstap’ ...
-** package ‘rstap’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-"/opt/R/4.0.3/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/stap_binomial.stan
-Wrote C++ file "stan_files/stap_binomial.cc"
-g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I"../inst/include" -I"`"/opt/R/4.0.3/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I'/opt/R/4.0.3/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.0.3/lib/R/site-library/rstan/include' -I'/opt/R/4.0.3/lib/R/site-library/BH/include' -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c stan_files/stap_binomial.cc -o stan_files/stap_binomial.o
-In file included from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.0.3/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
-...
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:23:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_stap_binomial_namespace::model_stap_binomial; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.0.3/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:10: required from here
-/opt/R/4.0.3/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:179: stan_files/stap_binomial.o] Error 1
-rm stan_files/stap_binomial.cc
-ERROR: compilation failed for package ‘rstap’
-* removing ‘/tmp/workdir/rstap/old/rstap.Rcheck/rstap’
-
-
-```
-# scoper
-
-
-
-* Version: 1.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/scoper
-* Date/Publication: 2020-08-10 21:50:02 UTC
-* Number of recursive dependencies: 115
-
-Run `cloud_details(, "scoper")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/scoper/new/scoper.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘scoper/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘scoper’ version ‘1.1.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'alakazam', 'shazam'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/scoper/old/scoper.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘scoper/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘scoper’ version ‘1.1.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'alakazam', 'shazam'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# spectralAnalysis
-
-
-
-* Version: 3.12.0
-* GitHub: NA
-* Source code: https://github.com/cran/spectralAnalysis
-* Date/Publication: 2018-06-12 14:30:39 UTC
-* Number of recursive dependencies: 104
-
-Run `cloud_details(, "spectralAnalysis")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/spectralAnalysis/new/spectralAnalysis.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘spectralAnalysis/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘spectralAnalysis’ version ‘3.12.0’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'BiocGenerics', 'NMF', 'hNMF'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/spectralAnalysis/old/spectralAnalysis.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘spectralAnalysis/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘spectralAnalysis’ version ‘3.12.0’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'BiocGenerics', 'NMF', 'hNMF'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# StroupGLMM
+# CausalImpact
-* Version: 0.1.0
-* GitHub: https://github.com/MYaseen208/StroupGLMM
-* Source code: https://github.com/cran/StroupGLMM
-* Date/Publication: 2016-04-19 01:00:56
-* Number of recursive dependencies: 108
+* Version: 1.2.7
+* GitHub: NA
+* Source code: https://github.com/cran/CausalImpact
+* Date/Publication: 2021-06-07 06:40:02 UTC
+* Number of recursive dependencies: 72
-Run `cloud_details(, "StroupGLMM")` for more info
+Run `cloud_details(, "CausalImpact")` for more info
@@ -2189,17 +17,16 @@ Run `cloud_details(, "StroupGLMM")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/StroupGLMM/new/StroupGLMM.Rcheck’
-* using R version 4.0.3 (2020-10-10)
+* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’
+* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘StroupGLMM/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘StroupGLMM’ version ‘0.1.0’
+* using option ‘--no-manual’
+* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
+* this is package ‘CausalImpact’ version ‘1.2.7’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘mutoss’
+Packages required but not available: 'bsts', 'Boom'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -2214,17 +41,16 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/StroupGLMM/old/StroupGLMM.Rcheck’
-* using R version 4.0.3 (2020-10-10)
+* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’
+* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘StroupGLMM/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘StroupGLMM’ version ‘0.1.0’
+* using option ‘--no-manual’
+* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
+* this is package ‘CausalImpact’ version ‘1.2.7’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘mutoss’
+Packages required but not available: 'bsts', 'Boom'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -2236,196 +62,95 @@ Status: 1 ERROR
```
-# superb
+# ctsem
-* Version: 0.9.7.5
-* GitHub: https://github.com/dcousin3/superb
-* Source code: https://github.com/cran/superb
-* Date/Publication: 2021-06-23 04:10:02 UTC
-* Number of recursive dependencies: 159
+* Version: 3.6.0
+* GitHub: https://github.com/cdriveraus/ctsem
+* Source code: https://github.com/cran/ctsem
+* Date/Publication: 2022-03-10 11:20:19 UTC
+* Number of recursive dependencies: 125
-Run `cloud_details(, "superb")` for more info
+Run `cloud_details(, "ctsem")` for more info
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/superb/new/superb.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘superb/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘superb’ version ‘0.9.7.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘referenceIntervals’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/superb/old/superb.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘superb/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘superb’ version ‘0.9.7.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘referenceIntervals’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# SynthETIC
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/agi-lab/SynthETIC
-* Source code: https://github.com/cran/SynthETIC
-* Date/Publication: 2021-04-02 12:10:02 UTC
-* Number of recursive dependencies: 106
-
-Run `cloud_details(, "SynthETIC")` for more info
+## In both
-
+* checking whether package ‘ctsem’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details.
+ ```
-## Error before installation
+## Installation
### Devel
```
-* using log directory ‘/tmp/workdir/SynthETIC/new/SynthETIC.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘SynthETIC/DESCRIPTION’ ... OK
-* this is package ‘SynthETIC’ version ‘1.0.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘SynthETIC-demo.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
+* installing *source* package ‘ctsem’ ...
+** package ‘ctsem’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+"/opt/R/4.1.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/ctsm.stan
+DIAGNOSTIC(S) FROM PARSER:
+Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
+ Positive values rounded down, negative values rounded up or down in platform-dependent way.
-```
-* using log directory ‘/tmp/workdir/SynthETIC/old/SynthETIC.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘SynthETIC/DESCRIPTION’ ... OK
-* this is package ‘SynthETIC’ version ‘1.0.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
+Wrote C++ file "stan_files/ctsm.cc"
...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘SynthETIC-demo.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-# NA
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
-
-Run `cloud_details(, "NA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
+stan_files/ctsm.hpp: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’:
+stan_files/ctsm.hpp:2348:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
+ 2348 | T__ log_prob(std::vector& params_r__,
+ | ^~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stan_files/ctsm.o] Error 1
+rm stan_files/ctsm.cc
+ERROR: compilation failed for package ‘ctsem’
+* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’
```
### CRAN
```
+* installing *source* package ‘ctsem’ ...
+** package ‘ctsem’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+"/opt/R/4.1.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/ctsm.stan
+DIAGNOSTIC(S) FROM PARSER:
+Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
+ Positive values rounded down, negative values rounded up or down in platform-dependent way.
-
-
-
+Wrote C++ file "stan_files/ctsm.cc"
+...
+stan_files/ctsm.hpp: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’:
+stan_files/ctsm.hpp:2348:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
+ 2348 | T__ log_prob(std::vector& params_r__,
+ | ^~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stan_files/ctsm.o] Error 1
+rm stan_files/ctsm.cc
+ERROR: compilation failed for package ‘ctsem’
+* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’
```
-# tigger
+# loon.ggplot
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/tigger
-* Date/Publication: 2020-05-13 05:10:03 UTC
-* Number of recursive dependencies: 116
+* Version: 1.3.1
+* GitHub: https://github.com/great-northern-diver/loon.ggplot
+* Source code: https://github.com/cran/loon.ggplot
+* Date/Publication: 2022-02-07 21:50:06 UTC
+* Number of recursive dependencies: 103
-Run `cloud_details(, "tigger")` for more info
+Run `cloud_details(, "loon.ggplot")` for more info
@@ -2434,18 +159,20 @@ Run `cloud_details(, "tigger")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/tigger/new/tigger.Rcheck’
-* using R version 4.0.3 (2020-10-10)
+* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’
+* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘tigger/DESCRIPTION’ ... OK
+* using option ‘--no-manual’
+* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘tigger’ version ‘1.0.0’
+* this is package ‘loon.ggplot’ version ‘1.3.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Packages required but not available: 'alakazam', 'shazam'
+Package required but not available: ‘loon’
+
+Package suggested but not available for checking: ‘zenplots’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -2460,18 +187,20 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/tigger/old/tigger.Rcheck’
-* using R version 4.0.3 (2020-10-10)
+* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’
+* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘tigger/DESCRIPTION’ ... OK
+* using option ‘--no-manual’
+* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘tigger’ version ‘1.0.0’
+* this is package ‘loon.ggplot’ version ‘1.3.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Packages required but not available: 'alakazam', 'shazam'
+Package required but not available: ‘loon’
+
+Package suggested but not available for checking: ‘zenplots’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -2483,17 +212,17 @@ Status: 1 ERROR
```
-# trackr
+# SSVS
-* Version: 0.10.7
-* GitHub: NA
-* Source code: https://github.com/cran/trackr
-* Date/Publication: 2021-05-24 14:50:02 UTC
-* Number of recursive dependencies: 99
+* Version: 1.0.0
+* GitHub: https://github.com/sabainter/SSVS
+* Source code: https://github.com/cran/SSVS
+* Date/Publication: 2022-03-08 20:20:12 UTC
+* Number of recursive dependencies: 100
-Run `cloud_details(, "trackr")` for more info
+Run `cloud_details(, "SSVS")` for more info
@@ -2502,18 +231,17 @@ Run `cloud_details(, "trackr")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/trackr/new/trackr.Rcheck’
-* using R version 4.0.3 (2020-10-10)
+* using log directory ‘/tmp/workdir/SSVS/new/SSVS.Rcheck’
+* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘trackr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘trackr’ version ‘0.10.7’
+* using option ‘--no-manual’
+* checking for file ‘SSVS/DESCRIPTION’ ... OK
+* this is package ‘SSVS’ version ‘1.0.0’
+* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Packages required but not available:
- 'histry', 'CodeDepends', 'rsolr', 'roprov'
+Package required but not available: ‘BoomSpikeSlab’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -2528,18 +256,17 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/trackr/old/trackr.Rcheck’
-* using R version 4.0.3 (2020-10-10)
+* using log directory ‘/tmp/workdir/SSVS/old/SSVS.Rcheck’
+* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘trackr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘trackr’ version ‘0.10.7’
+* using option ‘--no-manual’
+* checking for file ‘SSVS/DESCRIPTION’ ... OK
+* this is package ‘SSVS’ version ‘1.0.0’
+* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Packages required but not available:
- 'histry', 'CodeDepends', 'rsolr', 'roprov'
+Package required but not available: ‘BoomSpikeSlab’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -2559,7 +286,7 @@ Status: 1 ERROR
* GitHub: NA
* Source code: https://github.com/cran/valse
* Date/Publication: 2021-05-31 08:00:02 UTC
-* Number of recursive dependencies: 54
+* Number of recursive dependencies: 53
Run `cloud_details(, "valse")` for more info
@@ -2582,12 +309,12 @@ Run `cloud_details(, "valse")` for more info
** package ‘valse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o
-Error in loadNamespace(name) : there is no package called ‘RcppGSL’
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o
+Error in loadNamespace(x) : there is no package called ‘RcppGSL’
...
*** installing help indices
** building package indices
@@ -2609,12 +336,12 @@ ERROR: loading failed
** package ‘valse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o
-gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o
-Error in loadNamespace(name) : there is no package called ‘RcppGSL’
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o
+gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o
+Error in loadNamespace(x) : there is no package called ‘RcppGSL’
...
*** installing help indices
** building package indices
@@ -2633,11 +360,11 @@ ERROR: loading failed
-* Version: 0.1.0
+* Version: 0.2.3
* GitHub: NA
* Source code: https://github.com/cran/vivid
-* Date/Publication: 2021-04-09 09:10:02 UTC
-* Number of recursive dependencies: 205
+* Date/Publication: 2021-11-20 01:30:02 UTC
+* Number of recursive dependencies: 202
Run `cloud_details(, "vivid")` for more info
@@ -2649,26 +376,26 @@ Run `cloud_details(, "vivid")` for more info
```
* using log directory ‘/tmp/workdir/vivid/new/vivid.Rcheck’
-* using R version 4.0.3 (2020-10-10)
+* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
+* using option ‘--no-manual’
* checking for file ‘vivid/DESCRIPTION’ ... OK
-* this is package ‘vivid’ version ‘0.1.0’
+* this is package ‘vivid’ version ‘0.2.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
- Error: Test failures
- Execution halted
+* checking tests ... OK
+ Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘vivid.Rmd’ using ‘UTF-8’... OK
‘vividQStart.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR, 2 NOTEs
+Status: 2 NOTEs
@@ -2679,172 +406,26 @@ Status: 1 ERROR, 2 NOTEs
```
* using log directory ‘/tmp/workdir/vivid/old/vivid.Rcheck’
-* using R version 4.0.3 (2020-10-10)
+* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
+* using option ‘--no-manual’
* checking for file ‘vivid/DESCRIPTION’ ... OK
-* this is package ‘vivid’ version ‘0.1.0’
+* this is package ‘vivid’ version ‘0.2.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
- Error: Test failures
- Execution halted
+* checking tests ... OK
+ Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘vivid.Rmd’ using ‘UTF-8’... OK
‘vividQStart.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... SKIPPED
-* DONE
-Status: 1 ERROR, 2 NOTEs
-
-
-
-
-
-```
-# wrswoR
-
-
-
-* Version: 1.1.1
-* GitHub: https://github.com/krlmlr/wrswoR
-* Source code: https://github.com/cran/wrswoR
-* Date/Publication: 2020-07-26 18:20:02 UTC
-* Number of recursive dependencies: 133
-
-Run `cloud_details(, "wrswoR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/wrswoR/new/wrswoR.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘wrswoR/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘wrswoR’ version ‘1.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking for GNU extensions in Makefiles ... OK
-* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
-* checking use of PKG_*FLAGS in Makefiles ... OK
-* checking compiled code ... OK
-* checking examples ... OK
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/wrswoR/old/wrswoR.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘wrswoR/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘wrswoR’ version ‘1.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking for GNU extensions in Makefiles ... OK
-* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
-* checking use of PKG_*FLAGS in Makefiles ... OK
-* checking compiled code ... OK
-* checking examples ... OK
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-# zenplots
-
-
-
-* Version: 1.0.3
-* GitHub: https://github.com/great-northern-diver/zenplots
-* Source code: https://github.com/cran/zenplots
-* Date/Publication: 2020-11-28 18:10:03 UTC
-* Number of recursive dependencies: 99
-
-Run `cloud_details(, "zenplots")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/zenplots/new/zenplots.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘zenplots/DESCRIPTION’ ... OK
-* this is package ‘zenplots’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'loon', 'graph', 'PairViz'
-
-Package suggested but not available for checking: ‘Rgraphviz’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/zenplots/old/zenplots.Rcheck’
-* using R version 4.0.3 (2020-10-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using options ‘--no-manual --no-build-vignettes’
-* checking for file ‘zenplots/DESCRIPTION’ ... OK
-* this is package ‘zenplots’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'loon', 'graph', 'PairViz'
-
-Package suggested but not available for checking: ‘Rgraphviz’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 2 NOTEs
diff --git a/revdep/problems.md b/revdep/problems.md
index 87d39ccc89..16b162b487 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,32 +1,74 @@
-# rvinecopulib
+# eurlex
-* Version: 0.5.5.1.1
-* GitHub: https://github.com/vinecopulib/rvinecopulib
-* Source code: https://github.com/cran/rvinecopulib
-* Date/Publication: 2021-01-06 16:00:12 UTC
-* Number of recursive dependencies: 72
+* Version: 0.4.1
+* GitHub: NA
+* Source code: https://github.com/cran/eurlex
+* Date/Publication: 2022-03-31 21:00:02 UTC
+* Number of recursive dependencies: 96
-Run `cloud_details(, "rvinecopulib")` for more info
+Run `cloud_details(, "eurlex")` for more info
## Newly broken
-* checking installed package size ... NOTE
+* checking re-building of vignette outputs ... WARNING
```
- installed size is 75.0Mb
- sub-directories of 1Mb or more:
- include 4.0Mb
- libs 70.6Mb
+ Error(s) in re-building vignettes:
+ ...
+ --- re-building ‘eurlexpkg.Rmd’ using rmarkdown
+
+ Attaching package: 'dplyr'
+
+ The following objects are masked from 'package:stats':
+
+ filter, lag
+
+ ...
+ Quitting from lines 167-174 (eurlexpkg.Rmd)
+ Error: processing vignette 'eurlexpkg.Rmd' failed with diagnostics:
+ no applicable method for 'read_xml' applied to an object of class "NULL"
+ --- failed re-building ‘eurlexpkg.Rmd’
+
+ SUMMARY: processing the following file failed:
+ ‘eurlexpkg.Rmd’
+
+ Error: Vignette re-building failed.
+ Execution halted
```
-## Newly fixed
+# gggrid
-* checking whether package ‘rvinecopulib’ can be installed ... ERROR
+
+
+* Version: 0.2-0
+* GitHub: https://github.com/pmur002/gggrid
+* Source code: https://github.com/cran/gggrid
+* Date/Publication: 2022-01-11 09:12:45 UTC
+* Number of recursive dependencies: 52
+
+Run `cloud_details(, "gggrid")` for more info
+
+
+
+## Newly broken
+
+* checking re-building of vignette outputs ... WARNING
```
- Installation failed.
- See ‘/tmp/workdir/rvinecopulib/old/rvinecopulib.Rcheck/00install.out’ for details.
+ Error(s) in re-building vignettes:
+ ...
+ --- re-building ‘gggrid.Rmd’ using rmarkdown
+ Quitting from lines 129-142 (gggrid.Rmd)
+ Error: processing vignette 'gggrid.Rmd' failed with diagnostics:
+ $ operator is invalid for atomic vectors
+ --- failed re-building ‘gggrid.Rmd’
+
+ SUMMARY: processing the following file failed:
+ ‘gggrid.Rmd’
+
+ Error: Vignette re-building failed.
+ Execution halted
```