diff --git a/.github/workflows/continuous-integration.yml b/.github/workflows/continuous-integration.yml index 22a7108..2e1947d 100644 --- a/.github/workflows/continuous-integration.yml +++ b/.github/workflows/continuous-integration.yml @@ -7,63 +7,67 @@ on: pull_request: jobs: - standard: + standard-lint-test: name: Lint and test runs-on: ubuntu-latest strategy: matrix: python-version: - - "3.9" - "3.10" - "3.11" - "3.12" + - "3.13" steps: - - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: actions/checkout@v5 + - uses: actions/setup-python@v6 with: python-version: ${{ matrix.python-version }} - cache: pip - - name: Install dependencies for linting - run: pip install '.[dev]' + - uses: astral-sh/setup-uv@v6 + - name: Install dependencies + run: uv sync --locked --group dev - name: Lint - run: pre-commit run --all-files - - name: Install dependencies for testing - run: pip install '.[test]' + run: uv run pre-commit run --all-files + - name: Test + run: uv run pytest + minimum-dependencies-test: + name: Minimum dependencies + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v5 + - uses: actions/setup-python@v5 + with: + python-version: "3.10" + - uses: astral-sh/setup-uv@v6 + - name: Install minimum dependencies + run: uv sync --resolution lowest-direct --group dev - name: Test - run: pytest + run: uv run pytest codecov: name: Codecov needs: - - standard + - standard-lint-test runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 - with: - python-version: "3.12" - cache: pip + - uses: actions/checkout@v5 + - uses: astral-sh/setup-uv@v6 - name: Install - run: pip install '.[test]' + run: uv sync --locked --group dev - name: Test - run: pytest --cov=stactask + run: uv run pytest --cov=stactask --cov-report=xml - name: Upload coverage to Codecov uses: codecov/codecov-action@v4 with: token: ${{ secrets.CODECOV_TOKEN }} - file: ./coverage.xml fail_ci_if_error: false docs: name: Docs needs: - - standard + - standard-lint-test runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 - with: - python-version: "3.11" - cache: pip + - uses: actions/checkout@v5 + - uses: astral-sh/setup-uv@v6 - name: Install - run: pip install . -r docs/requirements.txt + run: uv sync --locked --only-group docs - name: Make docs - run: cd docs && make html + run: cd docs && uv run make html diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index ae39f6e..2fb23e3 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -10,22 +10,15 @@ jobs: name: release runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v5 - - name: Set up Python 3.x - uses: actions/setup-python@v5 - with: - python-version: "3.x" - - - name: Install release dependencies - run: | - python -m pip install --upgrade pip - pip install build twine + - uses: astral-sh/setup-uv@v6 - name: Build and publish package env: TWINE_USERNAME: ${{ secrets.PYPI_STACUTILS_USERNAME }} TWINE_PASSWORD: ${{ secrets.PYPI_STACUTILS_PASSWORD }} run: | - python -m build - twine upload dist/* + uv build + uv tool install twine + uv tool run twine upload dist/* diff --git a/.gitignore b/.gitignore index eb50c71..6c798e0 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,5 @@ +__version__.py + # Byte-compiled / optimized / DLL files __pycache__/ *.py[cod] diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index fc08103..0d4ff4c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,32 +1,50 @@ -# Configuration file for pre-commit (https://pre-commit.com/). -# Please run `pre-commit run --all-files` when adding or changing entries. - repos: - - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.5.0 + - repo: local hooks: - - id: trailing-whitespace - - id: end-of-file-fixer - - id: check-yaml + - id: ruff_check + name: ruff check + entry: ruff check --force-exclude + language: python + 'types_or': [python, pyi] + args: [--fix, --exit-non-zero-on-fix] + require_serial: true + - id: ruff_format + name: ruff format + entry: ruff format --force-exclude + language: python + 'types_or': [python, pyi] + args: [] + require_serial: true - id: check-added-large-files - - repo: https://github.com/codespell-project/codespell - rev: v2.2.6 - hooks: - - id: codespell - args: [--ignore-words=.codespellignore] - types_or: [jupyter, markdown, python, shell] - - repo: https://github.com/psf/black - rev: 24.2.0 - hooks: - - id: black - - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.9.0 - hooks: + name: Check for added large files + entry: check-added-large-files + language: system + - id: check-toml + name: Check Toml + entry: check-toml + language: system + types: [toml] + - id: check-yaml + name: Check Yaml + entry: check-yaml + language: system + types: [yaml] + - id: end-of-file-fixer + name: Fix End of Files + entry: end-of-file-fixer + language: system + types: [text] + stages: [pre-commit, pre-push, manual] + - id: trailing-whitespace + name: Trim Trailing Whitespace + entry: trailing-whitespace-fixer + language: system + types: [text] + stages: [pre-commit, pre-push, manual] - id: mypy - additional_dependencies: - - pytest - - types-setuptools == 65.7.0.3 - - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.4.1 - hooks: - - id: ruff + name: mypy + entry: mypy + language: python + 'types_or': [python, pyi] + args: [] + require_serial: true diff --git a/CHANGELOG.md b/CHANGELOG.md index b478724..b071c47 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,30 +5,53 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). +## Unreleased + +### Added + +- ([#176]) Adds a `collection_matchers` + array to the payload process block to support deterministic order when collection + matching. +- ([#176]) Adds a `collection_options` + object to the payload process block to support collection-specific options such as + upload options. + +### Changed + +- ([#176]) Separated the payload + data model from the Task class. +- ([#176]) Direct access to the + payload dictionary is now through `self.payload` rather than `self._payload` + (deprecated). +- ([#176]) Payload properties are now + accessed through `self.payload.` rather than `self.` (deprecated). +- ([#176]) Removed support for Python + 3.9. + ## [0.6.1] ### Added -- ([#167](https://github.com/stac-utils/stac-task/pull/167)) Adds workflow-level +- ([#167]) Adds workflow-level options to the ProcessDefinition object in a new `workflow_options` field. They are combined with each task's options, giving precedence to the task options on conflict. -- ([#167](https://github.com/stac-utils/stac-task/pull/167)) Adds a `workflow_options` +- ([#167]) Adds a `workflow_options` property to the `Task` class that returns the `workflow_options` dictionary from the `ProcessDefinition` object. -- ([#167](https://github.com/stac-utils/stac-task/pull/167)) Adds a `task_options` +- ([#167]) Adds a `task_options` property to the `Task` class that returns the task options from the `tasks` dictionary in the `ProcessDefinition` object. ### Deprecated -- ([#166](https://github.com/stac-utils/stac-task/pull/166)) Bare `ProcessDefinition` +- ([#166]) Bare `ProcessDefinition` objects are deprecated in favor of arrays of `ProcessDefinition` objects. ## [0.6.0] ### ⚠️ Breaking Change -- ([#147](https://github.com/stac-utils/stac-task/pull/147)) Moved +- ([#147]) Moved `Task.validate` from class method to instance method, availing implementers of other instance convenience methods (i.e. `self.parameters`). @@ -76,13 +99,13 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### Added -- ([#92](https://github.com/stac-utils/stac-task/pull/92)) Task.upload_item_assets_to_s3 and asset_io.upload_item_assets_to_s3 support explicitly specifying the boto3utils3.s3 object. +- ([#92]) Task.upload_item_assets_to_s3 and asset_io.upload_item_assets_to_s3 support explicitly specifying the boto3utils3.s3 object. ## [v0.4.1] - 2024-03-06 ### Fixed -- ([#90](https://github.com/stac-utils/stac-task/pull/90)) Block asset_io +- ([#90]) Block asset_io module from reaching out to upstream stac APIs (especially on NASA Wednesdays `transform_hrefs=False`) @@ -90,14 +113,14 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### Fixed -- ([#86](https://github.com/stac-utils/stac-task/pull/86)) Guard cleanup of workdir to ensure task was actually created. +- ([#86]) Guard cleanup of workdir to ensure task was actually created. ### Added -- ([#72](https://github.com/stac-utils/stac-task/pull/72)) Given that `_get_file` is part of the `AsyncFileSystem` spec, this +- ([#72]) Given that `_get_file` is part of the `AsyncFileSystem` spec, this adds the synchronous `get_file` as a way to retrieve files if `_get_file` is not found. -- ([#77](https://github.com/stac-utils/stac-task/pull/77)) Added option `keep_original_filenames` to download routines to +- ([#77]) Added option `keep_original_filenames` to download routines to support legacy applications dependent on filename specifics. ## [v0.3.0] - 2023-12-20 @@ -112,9 +135,9 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### Changed - Ensure `workdir` is an absolute path - ([#54](https://github.com/stac-utils/stac-task/pull/51)). + ([#54]). - When a `workdir` is set for a `Task` the `workdir` will no longer be removed - by default ([#51](https://github.com/stac-utils/stac-task/pull/51)). That is, + by default ([#51]). That is, the `save_workdir` argument to `Task` constructor now defaults to `None`, and if left as `None` the default behavior is now conditional on whether or not a `workdir` is specified. @@ -131,8 +154,8 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### Fixed -- Typing ([#11](https://github.com/stac-utils/stac-task/pull/11), [#25](https://github.com/stac-utils/stac-task/pull/25)) -- Removed console scripts ([#18](https://github.com/stac-utils/stac-task/pull/18)) +- Typing ([#11], [#25]) +- Removed console scripts ([#18]) ## [v0.1.0] - 2022-10-31 @@ -150,3 +173,18 @@ Initial release. [v0.2.0]: [v0.1.1]: [v0.1.0]: + +[#176]: https://github.com/stac-utils/stac-task/pull/176 +[#167]: https://github.com/stac-utils/stac-task/pull/167 +[#166]: https://github.com/stac-utils/stac-task/pull/166 +[#147]: https://github.com/stac-utils/stac-task/pull/147 +[#92]: https://github.com/stac-utils/stac-task/pull/92 +[#90]: https://github.com/stac-utils/stac-task/pull/90 +[#86]: https://github.com/stac-utils/stac-task/pull/86 +[#77]: https://github.com/stac-utils/stac-task/pull/77 +[#72]: https://github.com/stac-utils/stac-task/pull/72 +[#54]: https://github.com/stac-utils/stac-task/pull/54 +[#51]: https://github.com/stac-utils/stac-task/pull/51 +[#25]: https://github.com/stac-utils/stac-task/pull/25 +[#18]: https://github.com/stac-utils/stac-task/pull/18 +[#11]: https://github.com/stac-utils/stac-task/pull/11 diff --git a/README.md b/README.md index a4e548c..93a3b86 100644 --- a/README.md +++ b/README.md @@ -2,20 +2,21 @@ # STAC Task (stac-task) [![Build Status](https://github.com/stac-utils/stac-task/workflows/CI/badge.svg?branch=main)](https://github.com/stac-utils/stac-task/actions/workflows/continuous-integration.yml) -[![PyPI version](https://badge.fury.io/py/stac-task.svg)](https://badge.fury.io/py/stac-task) +[![PyPI version](https://badge.fury.io/py/stactask.svg)](https://badge.fury.io/py/stactask) [![Documentation Status](https://readthedocs.org/projects/stac-task/badge/?version=latest)](https://stac-task.readthedocs.io/en/latest/?badge=latest) [![codecov](https://codecov.io/gh/stac-utils/stac-task/branch/main/graph/badge.svg)](https://codecov.io/gh/stac-utils/stac-task) [![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) - [Quickstart for Creating New Tasks](#quickstart-for-creating-new-tasks) - [Task Input](#task-input) - - [ProcessDefinition Object](#processdefinition-object) - - [UploadOptions Object](#uploadoptions-object) - - [path\_template](#path_template) - - [collections](#collections) - - [tasks](#tasks) - - [TaskConfig Object](#taskconfig-object) - - [workflow_options](#workflow_options) +- [ProcessDefinition Object](#processdefinition-object) + - [UploadOptions Object](#uploadoptions-object) + - [path\_template](#path_template) + - [collections](#collections) + - [CollectionMatcher Object](#collectionmatcher-object) + - [collection\_options](#collection_options) + - [tasks](#tasks) + - [workflow_options](#workflow_options) - [Full ProcessDefinition Example](#full-processdefinition-example) - [Migration](#migration) - [0.4.x -\> 0.5.x](#04x---05x) @@ -23,13 +24,11 @@ - [Development](#development) - [Contributing](#contributing) -This Python library consists of the Task class, which is used to create custom tasks -based on a "STAC In, STAC Out" approach. The Task class acts as wrapper around custom -code and provides several convenience methods for modifying STAC Items, creating derived -Items, and providing a CLI. - -This library is based on a [branch of cirrus-lib](https://github.com/cirrus-geo/cirrus-lib/tree/features/task-class) -except aims to be more generic. +This Python library consists of a Task class and Payload class. The Task class is used +to create custom tasks based on a "STAC In, STAC Out" approach. The Task class acts as +wrapper around custom code and provides several convenience methods for modifying STAC +Items, creating derived Items, and providing a CLI. The Payload class provides input +payload validation and structured access to payload components. ## Quickstart for Creating New Tasks @@ -42,7 +41,7 @@ class MyTask(Task): name = "my-task" description = "this task does it all" - def validate(self, payload: dict[str, Any]) -> bool: + def validate(self) -> bool: return len(self.items) == 1 def process(self, **kwargs: Any) -> list[dict[str, Any]]: @@ -54,8 +53,10 @@ class MyTask(Task): config=DownloadConfig(include=['data']) ) - # operate on the local file to create a new asset - item = self.upload_item_assets_to_s3(item) + # operate on the local 'data' asset file to create a new asset... + + # upload the new asset to S3 + item = self.upload_item_assets_to_s3(item, assets=['new-asset']) # this task returns a single item return [item.to_dict(include_self_link=True, transform_hrefs=False)] @@ -63,79 +64,157 @@ class MyTask(Task): ## Task Input -Task input is often referred to as a 'payload'. +Task input is referred to as a "payload" and has the following top-level fields. -| Field Name | Type | Description | -| ---------- | ------------------------- | --------------------------------------------------- | -| type | string | Must be FeatureCollection | -| features | [Item] | An array of STAC Items | -| process | [`ProcessDefinition`] | An array of `ProcessDefinition` objects. | -| ~~process~~ | ~~`ProcessDefinition`~~ | **DEPRECATED** A `ProcessDefinition` object | +| Field Name | Type | Description | +| ---------- | -------------------------- | ----------------------------------------------------- | +| type | string | Must be "FeatureCollection" | +| features | [Item] | An array of STAC Items | +| process | [ProcessDefinition Object] | **REQUIRED.** An array of `ProcessDefinition` objects | -### ProcessDefinition Object +## ProcessDefinition Object -A Task can be provided additional configuration via the 'process' field in the input -payload. +Provides configuration for a Task. -| Field Name | Type | Description | -| ---------------- | ------------------ | ------------------------------------------------------------------------ | -| description | string | Description of the process configuration | -| upload_options | `UploadOptions` | An `UploadOptions` object | -| tasks | Map | Dictionary of task configurations. | -| ~~tasks~~ | ~~[`TaskConfig`]~~ | **DEPRECATED** A list of `TaskConfig` objects. | -| workflow_options | Map | Dictionary of configuration options applied to all tasks in the workflow | +| Field Name | Type | Description | +| ------------------- | ---------------------------- | --------------------------------------------------------------------------------------------------------------------------------------------- | +| description | string | Description of the process configuration | +| upload_options | UploadOptions Object | **CONDITIONAL.** An `UploadOptions` object | +| collection_matchers | [CollectionMatcher Object] | **CONDITIONAL.** An array of `CollectionMatcher` objects used for collection assignment. Mutually exclusive with `upload_options.collections` | +| collection_options | Map | Dictionary of collection-specific configuration options | +| tasks | Map | Dictionary of task configurations | +| workflow_options | Map | Dictionary of configuration options applied to all tasks in a workflow | +Either `collection_matchers` OR `upload_options.collections` must be provided for +collection assignment. When using `collection_matchers`, each referenced collection must +have upload options available either in `collection_options` or in the global +`upload_options`. -#### UploadOptions Object +### UploadOptions Object -Options used when uploading Item assets to a remote server can be specified in a -'upload_options' field in the `ProcessDefinition` object. +Options used when uploading Item assets to a AWS S3. If `collection_options` is +provided, the Task will look there first for collection-specific upload options before +falling back to these upload options. -| Field Name | Type | Description | -| ------------- | ------------- | --------------------------------------------------------------------------------------- | -| path_template | string | **REQUIRED** A string template for specifying the location of uploaded assets | -| public_assets | [str] | A list of asset keys that should be marked as public when uploaded | -| headers | Map | A set of key, value headers to send when uploading data to s3 | -| collections | Map | A mapping of output collection name to a JSONPath pattern (for matching Items) | -| s3_urls | bool | Controls if the final published URLs should be an s3 (s3://*bucket*/*key*) or https URL | +| Field Name | Type | Description | +| ------------- | ------------------- | ------------------------------------------------------------------------------------------------------------ | +| path_template | string | **REQUIRED.** A string template for specifying the location of uploaded assets | +| public_assets | [string] | A list of asset keys that should be marked as public when uploaded | +| headers | Map | A set of key, value headers to send when uploading data to S3 | +| collections | Map | **DEPRECATED.** A mapping of output collection name to a JSONPath pattern | +| s3_urls | boolean | Controls if the final published URLs should be in S3 (`true`) or https (`false`) format. Defaults to `false` | -##### path_template +#### path_template -The 'path_template' string is a way to control the output location of uploaded assets +The `path_template` string is a way to control the output location of uploaded assets from a STAC Item using metadata from the Item itself. The template can contain fixed strings along with variables used for substitution. See [the PySTAC documentation for `LayoutTemplate`](https://pystac.readthedocs.io/en/stable/api/layout.html#pystac.layout.LayoutTemplate) for a list of supported template variables and their meaning. -##### collections +Example: + +```json +"path_template": "s3://my-bucket/${collection}/${year}/${month}/${day}/${id}" +``` -The 'collections' dictionary provides a collection ID and JSONPath pattern for matching -against STAC Items. At the end of processing, before the final STAC Items are returned, -the Task class can be used to assign all of the Items to specific collection IDs. For -each Item the JSONPath pattern for all collections will be compared. The first match -will cause the Item's Collection ID to be set to the provided value. +#### collections -For example: +Deprecated. The `collections` dictionary provides a collection ID and JSONPath pattern +for matching against STAC Items. At the end of processing, before the final STAC Items +are returned, the Task class can be used to assign all of the Items to specific +collection IDs. For each Item the JSONPath pattern for all collections will be compared. +The first match will cause the Item's Collection ID to be set to the provided value. +This field is deprecated in favor of the `collection_matchers` array, which guarantees +order during the matching process. + +Example: ```json "collections": { - "landsat-c2l2": "$[?(@.id =~ 'LC08.*')]" + "landsat-c2l2": "$[?(@.id =~ 'LC08.*')]", + "sentinel-2-l2a": "$[?(@.id =~ 'S2.*')]" } ``` In this example, the task will set any STAC Items that have an ID beginning with "LC08" -to the `landsat-c2l2` collection. - -See [JSONPath Online Evaluator](https://jsonpath.com) to experiment with JSONPath and +to the `landsat-c2l2` collection and any STAC Items that have an ID beginning with "S2" +to the `sentinel-2-l2a` collection. See [JSONPath Online +Evaluator](https://jsonpath.com) to experiment with JSONPath and [regex101](https://regex101.com) to experiment with regex. -#### tasks +### CollectionMatcher Object + +The `collection_matchers` array provides deterministic ordering to collection +assignment. This is mutually exclusive with the legacy `collections` field in +`UploadOptions`. Collection matchers are processed in the order they appear in the +array, and the first match determines the collection assignment. + +| Field Name | Type | Description | +| --------------- | ------ | ----------------------------------------------------------------------------------------------- | +| type | string | **REQUIRED.** The matcher type. Supported values: "jsonpath", "catch_all" | +| pattern | string | **CONDITIONAL.** JSONPath pattern for matching Items. Required for all types except "catch_all" | +| collection_name | string | **REQUIRED.** The collection ID to assign to matching Items | + +Example: -The 'tasks' field is a dictionary with an optional key for each task. If present, it +```json +"collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.id =~ 'LC08.*')]", + "collection_name": "landsat-c2l2" + }, + { + "type": "jsonpath", + "pattern": "$[?(@.id =~ 'S2.*')]", + "collection_name": "sentinel-2-l2a" + }, + { + "type": "catch_all", + "collection_name": "default-collection" + } +] +``` + +### collection_options + +The `collection_options` field is a dictionary that allows you to specify +collection-specific configuration options, including `UploadOptions` objects. For +example, when uploading asset data to S3, the Task will first look for +collection-specific upload options and fall back to the global options (the top-level +`upload_options` dictionary) if none are found. + +Example: + +```json +"collection_options": { + "sentinel-2-l2a": { + "upload_options": { + "path_template": "s3://sentinel-bucket/${collection}/${year}/${month}/${day}/${id}", + "headers": { + "StorageClass": "INTELLIGENT_TIERING" + } + } + }, + "landsat-c2l2": { + "upload_options": { + "path_template": "s3://landsat-bucket/${collection}/${path}/${row}/${id}", + "public_assets": ["thumbnail", "overview"] + } + } +} +``` + +### tasks + +The `tasks` field is a dictionary with an optional key for each task. If present, it contains a dictionary that is converted to a set of keywords and passed to the Task's -`process` function. The documentation for each Task will provide the list of available +`process` function. The documentation for each Task should provide the list of available parameters. +Example: + ```json { "tasks": { @@ -153,23 +232,22 @@ In the example above, a task named `task-a` would have the `param1=value1` passe keyword, while `task-c` would have `param2=value2` passed. If there were a `task-b` to be run, it would not be passed any keywords. -#### TaskConfig Object - -**DEPRECATED** The 'tasks' field _should_ be a dictionary of parameters, with task names -as keys. See [tasks](#tasks) for more information. `TaskConfig` objects are supported -for backwards compatibility. +### workflow_options -| Field Name | Type | Description | -| ---------- | ------------- | ----------------------------------------------------------------------------------- | -| name | str | **REQUIRED** Name of the task | -| parameters | Map | Dictionary of keyword parameters that will be passed to the Task `process` function | +The `workflow_options` field is a dictionary of options that apply to all tasks in the +workflow. The `workflow_options` dictionary is combined with each task's option +dictionary. If a key in the `workflow_options` dictionary conflicts with a key in a +task's option dictionary, the task option value takes precedence. -#### workflow_options +Example: -The 'workflow_options' field is a dictionary of options that apply to all tasks in the -workflow. The 'workflow_options' dictionary is combined with each task's option -dictionary. If a key in the 'workflow_options' dictionary conflicts with a key in a -task's option dictionary, the task option value takes precedence. +```json +{ + "workflow_options": { + "global_param": "global_value" + } +} +``` ### Full ProcessDefinition Example @@ -178,14 +256,41 @@ task's option dictionary, the task option value takes precedence. "description": "My process configuration", "upload_options": { "path_template": "s3://my-bucket/${collection}/${year}/${month}/${day}/${id}", - "collections": { - "landsat-c2l2": "$[?(@.id =~ 'LC08.*')]" + "public_assets": ["thumbnail", "overview"] + }, + "collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.id =~ 'LC08.*')]", + "collection_name": "landsat-c2l2" + }, + { + "type": "jsonpath", + "pattern": "$[?(@.id =~ 'S2.*')]", + "collection_name": "sentinel-2-l2a" + }, + { + "type": "catch_all", + "collection_name": "default-collection" + } + ], + "collection_options": { + "sentinel-2-l2a": { + "upload_options": { + "path_template": "s3://sentinel-bucket/${collection}/${mgrs:utm_zone}/${mgrs:latitude_band}/${mgrs:grid_square}/${year}/${month}/${id}", + "headers": { + "StorageClass": "INTELLIGENT_TIERING" + } + } } }, "tasks": { "task-name": { "param": "value" } + }, + "workflow_options": { + "global_param": "global_value" } } ``` @@ -295,26 +400,25 @@ And will now need to be updated to this form: ## Development -Clone, install in editable mode with development and test requirements, and install the -**pre-commit** hooks: +Get [uv](https://docs.astral.sh/uv/getting-started/installation/). Then: ```shell git clone https://github.com/stac-utils/stac-task cd stac-task -pip install -e '.[dev,test]' -pre-commit install +uv sync --group dev +uv run pre-commit install ``` To run the tests: ```shell -pytest +uv run pytest ``` To lint all the files: ```shell -pre-commit run --all-files +uv run pre-commit run --all-files ``` ## Contributing diff --git a/docs/source/conf.py b/docs/source/conf.py index ab815ab..e0771ec 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -2,18 +2,32 @@ import os import sys +import subprocess +from datetime import datetime -sys.path.insert( - 0, os.path.abspath("../../src") -) # Source code dir relative to this file +sys.path.insert(0, os.path.abspath("../..")) # Source code dir relative to this file # -- Project information project = "STAC Task" -copyright = "2021, Element 84, Inc." +copyright = f"{datetime.now().year}, Element 84, Inc." -release = "0.6" -version = "0.6.1" + +def get_latest_tag() -> str: + try: + result = subprocess.run( + ["git", "describe", "--tags", "--abbrev=0"], + capture_output=True, + text=True, + check=True, + ) + return result.stdout.strip() + except: + return "0.0.0" + + +release = get_latest_tag() +version = release # -- General configuration diff --git a/docs/source/generated/stactask.rst b/docs/source/generated/stactask.rst deleted file mode 100644 index eaa1b85..0000000 --- a/docs/source/generated/stactask.rst +++ /dev/null @@ -1,33 +0,0 @@ -stactask -======== - -.. automodule:: stactask - - - - - - - - - - - - - - - - - - - -.. rubric:: Modules - -.. autosummary:: - :toctree: - :recursive: - - stactask.asset_io - stactask.exceptions - stactask.task - stactask.utils diff --git a/docs/source/index.rst b/docs/source/index.rst index 1b38160..795d95c 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -1,11 +1,11 @@ Welcome to STAC Task's documentation! ===================================== -**STAC Task** is a Python library for geospatial processing pipeline developers +**stac-task** is a Python library for geospatial processing pipeline developers that provides a standardized way of writing code. Check out the :doc:`usage` section for further information, including -how to :ref:`installation` the project. +project :ref:`installation`. .. note:: diff --git a/docs/source/usage.rst b/docs/source/usage.rst index 5ac22a8..0c42e30 100644 --- a/docs/source/usage.rst +++ b/docs/source/usage.rst @@ -9,7 +9,7 @@ Usage Installation ------------ -To use STAC Task, first install it using pip: +To use **stac-task**, first install it using pip: .. code-block:: console @@ -19,9 +19,9 @@ To use STAC Task, first install it using pip: A simple task definition ------------------------ -The intended use of stac-task is for a developer to extend the `stactask.Task` class. An trivial -example class that does is shown below, which accepts a payload containing a field `item_id` and -generates a STAC Item with this id. +The intended use of **stac-task** is for a developer to extend the ``stactask.Task`` +class. A trivial example class that does this is shown below. It accepts a payload +containing a task parameter ``item_id`` and generates a STAC Item with this ID. .. code-block:: python @@ -37,22 +37,21 @@ generates a STAC Item with this id. from stactask.task import Task - class MyTask(Task): # type: ignore + class MyTask(Task): name = "my-task" description = "Create STAC Items for payload" version = "v2024.02.01" # override from Task - @classmethod - def validate(cls, payload: dict[str, Any]) -> bool: - if "item_id" not in payload: - raise InvalidInput("Missing field 'item_id' in payload") + def validate(self) -> bool: + if "item_id" not in self.task_options: + raise InvalidInput("Missing required field 'item_id' in task options") return True # override from Task def process(self, **kwargs: Any) -> list[dict[str, Any]]: item = Item( - id=self._payload["item_id"], + id=self.task_options["item_id"], geometry={ "type": "Polygon", "coordinates": [ @@ -70,156 +69,177 @@ generates a STAC Item with this id. properties={}, ) + self.logger.debug(f"Created Item with id '{item.id}'") + return [item.to_dict()] # Support for running as a Lambda Function def handler(event: dict[str, Any], context: Any) -> dict[str, Any]: - return MyTask.handler(event) # type: ignore + return MyTask.handler(event) # Support for running as a CLI application if __name__ == "__main__": MyTask.cli() -The expected input looks like the following: +A possible input payload looks like the following: .. code-block:: json { "id": "my-task/workflow-my-task/5427299e5b635537f33c07e0ad32fb87", - "item_id": "G23923", - "process": { - "upload_options": { - "collections": { - "my-collection": "$[?(@.id =~ '.*')]" + "process": [ + { + "upload_options": { + "path_template": "s3://my-bucket/${collection}/${year}/${month}/${day}/${id}" + }, + "collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.id =~ '.*')]", + "collection_name": "my-collection" + } + ], + "tasks": { + "my-task": { + "item_id": "G23923" + } } } - } + ] } -In Task, the `/process/upload_options/collections` mapping uses JSONPath to map attributes of the -output Item to the collection that should be assigned to it. In this case, we only have one defined -that matches on any `id` value, and sets the collection to `my-collection`. +The ``collection_matchers`` array defines how to assign output STAC Items to a +collection. More than one matcher can be defined, and the first one that matches is +used. In this case, we only have one matcher defined that matches on any Item ``id`` +value. Collection assignment occurs after the Tasks's ``process`` method is called. + +The ``upload_options`` object defines AWS S3 upload options for Item assets In this +case, the only option defined is a ``path_template`` that uses an Item's collection ID, +year, month, day, and ID to construct the S3 key for the Item's assets. Our example Task +does not upload any Item assets to S3, so the ``upload_options`` are not used and could +be an empty object in this case. -Running this with `python my-task.py run --local in.json` results in the following -output JSON, which has modified the payload to add a new -`features` attribute array. +Running the example module defined above with ``python my-task.py run in.json`` results +in the following output JSON, which contains the original input payload plus a new +``features`` array containing the Item created by the Task's ``process`` method. .. code-block:: json { "id": "my-task/workflow-my-task/5427299e5b635537f33c07e0ad32fb87", - "item_id": "G23923", - "process": { - "upload_options": { - "collections": { - "my-collection": "$[?(@.id =~ '.*')]" + "process": [ + { + "collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.id =~ '.*')]", + "collection_name": "my-collection" + } + ], + "collection_options": { + "my-collection": { + "upload_options": { + "path_template": "{collection}/{year}/{month}/{day}/{item_id}" + } + } + }, + "tasks": { + "my-task": { + "item_id": "G23923" + } } } - }, + ], "features": [ { "type": "Feature", - "stac_version": "1.0.0", + "stac_version": "1.1.0", + "stac_extensions": [], "id": "G23923", - "properties": { - "datetime": "2024-04-04T13:55:05.598886Z", - "processing:software": { - "my-task": "v2024.02.01" - } - }, "geometry": { - "type": "Polygon", - "coordinates": [ - [ - [ 100.0, 0.0 ], - [ 101.0, 0.0 ], - [ 101.0, 1.0 ], - [ 100.0, 1.0 ], - [ 100.0, 0.0 ] + "type": "Polygon", + "coordinates": [ + [ + [100.0, 0.0], + [101.0, 0.0], + [101.0, 1.0], + [100.0, 1.0], + [100.0, 0.0], + ] ] - ] + }, + "bbox": [], + "properties": { + "datetime": "2025-09-14T13:40:34.201426Z" }, "links": [], "assets": {}, - "stac_extensions": [ - "https://stac-extensions.github.io/processing/v1.1.0/schema.json" - ], "collection": "my-collection" } ] } +Note the presence of the ``collection`` field, which was automatically populated based +on the ``collection_matchers`` definition in the input payload. + CLI Usage --------- -To run a Task as a CLI application, add a main definition to the class inheriting Task: +To run a Task as a CLI application, add a ``__name__ == "__main__"`` check to the module +containing your Task class: .. code-block:: python if __name__ == "__main__": MyTask.cli() -This provides a CLI that supports several useful flags for using stac-task. Invoking it -without any arguments will print usage. +This provides a CLI that supports several useful flags for using **stac-task**. Invoking +it without any arguments will print usage. Note that the first argument of the command +is always ``run``. -A common way of invoking the task is: - -.. code-block:: console - - src/mytask/mytask.py run --local --logging DEBUG - - -An example of running it might look like: +A common way of invoking the task with the CLI is: .. code-block:: console src/mytask/mytask.py run --logging DEBUG --local my-input-file.json -Payload can be read from stdin: - -.. code-block:: console - - cat input.json | src/mytask/mytask.py run --local | tee output.json - -The first argument is the command, of which the only option currently is `run`. +where the ``--local`` option provides a set of pre-configured option values, including +a name for the local working directory, the name of the output JSON, whether to +save the working directory, and whether to bypass any Item asset uploading that your +task might perform. -- `--logging ` - configure the logging level of the task, one of DEBUG, INFO, WARN, ERROR, or CRITICAL -- `--local` - sets several other flags to reasonable values for local testing, including `save-workdir`, - `skip-upload`, `skip-validation`, sets the `workdir`` to the directory `local-output`, and - sets the `output` file to `local-output/output-payload.json`. -- `input` - the location of the input payload file +Payloads can also be read from stdin: -All of the parameters set by `--local` can also be configured independently: +.. code-block:: console -- `--workdir ` - the directory that task operations should use for storage -- `--save-workdir` - retain the workdir after the task exits -- `--output ` - the file path to write the task output to -- `--skip-upload` - don't upload the payload to S3 -- `--skip-validation` - don't perform JSON validate on the payload + cat my-input-file.json | src/mytask/mytask.py run --logging DEBUG --local API Usage --------- -The Task constructor accepts a `payload` argument of type `dict[str, Any]`, usually passed -though the `handler` static method, that represents -a JSON object. This can either be the payload itself or a reference to the actual payload. -If the Task payload dictionary contains a field named either `href` or `url`, the `handler` method will set -the Task's payload to the contents of that URI. Any fsspec storage supported and configured can be used, -such as a local file, a remote HTTP URL, or an S3 URI. - -Typically, this payload contains configuration needed for the Task to execute. The payload can be -accessed via `self._payload`. The Task can directly modify the payload, though most commonly, -the payload is only added to by returning a list of STAC Items from the overridden `process` method. - -When the `handler` static method is invoked, the following sequence of events happens: - -- the `validate` method is called on the payload -- the payload is populated with either the direct value or the contents of `href` or `url` -- the `process` method is executed to generate a list of STAC Items -- the list of list of STAC Items (represented as list of dictionaries) output from - `process` is assigned to the payload `features` attribute - to the payload's `features` attribute -- the payload's property `/process/upload_options/collections` mapping uses - JSONPath to map attributes of the - output Item to the collection that should be assigned to it -- the contents of _workdir are deleted, unless `save-workdir` is set +The Task constructor accepts a ``payload`` argument of type ``dict[str, Any]``, usually +passed though the ``handler`` class method, that represents a JSON object. This can +either be the payload itself or a reference to the actual payload. If the Task payload +dictionary contains a field named either ``href`` or ``url``, the ``handler`` method +interprets the field to be a reference to the actual payload and will set the Task's +payload to the contents of that URI. Any **fsspec** storage supported and configured can +be used, such as a local file, a remote HTTP URL, or an S3 URI. + +Task executions typically requires configuration information contained in the payload, +which can be accessed via ``self.payload``. The Task can directly modify the +``self.payload`` dictionary, though it is more common for the payload to simply be +extended by returning a list of STAC Items from the overridden ``process`` method. + +When the ``handler`` class method is invoked, the following sequence of events happens: + +- The payload is loaded with either the direct value or the contents of ``href`` or + ``url``. +- A Task instance is created with this payload and any keyword arguments, which triggers + built-in payload validation and execution of the (potentially) overridden ``validate`` + method. +- The ``process`` method is executed to generate a list of STAC Items. +- The list of STAC Items (represented as list of dictionaries) output from + ``process`` is assigned to the payload ``features`` attribute. +- Item collection assignment occurs using either the ``/process/collection_matchers`` + list or the legacy ``/process/upload_options/collections`` dictionary. +- The temporary work directory is deleted, unless ``save-workdir`` is set. diff --git a/pyproject.toml b/pyproject.toml index f3c5144..395dd54 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,11 +1,14 @@ +[build-system] +requires = ["hatchling", "hatch-vcs"] +build-backend = "hatchling.build" + [project] name = "stactask" -version = "0.6.1" authors = [{ name = "Matthew Hanson", email = "matt.a.hanson@gmail.com" }] maintainers = [{ name = "Ian Cooke", email = "ircwaves@gmail.com" }] description = "Class interface for running custom algorithms and workflows on STAC Items" readme = "README.md" -requires-python = ">=3.9" +requires-python = ">=3.10" keywords = ["pystac", "imagery", "raster", "catalog", "STAC"] license = { text = "Apache-2.0" } classifiers = [ @@ -14,10 +17,10 @@ classifiers = [ "License :: OSI Approved :: Apache Software License", "Natural Language :: English", "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", ] dependencies = [ "pystac>=1.6", @@ -29,18 +32,34 @@ dependencies = [ "requests>=2.28.1", "s3fs>=2022.8.2", ] +dynamic = [ + "version" +] + +[tool.hatch.version] +source = "vcs" + +[tool.hatch.build.hooks.vcs] +version-file = "stactask/__version__.py" -[project.optional-dependencies] +[dependency-groups] dev = [ - "black~=24.0", "codespell~=2.3", "mypy~=1.9", "pre-commit~=3.7", + "pre-commit-hooks~=4.6", "ruff~=0.6.5", - "types-setuptools~=75.1", - "boto3-stubs", + "boto3-stubs~=1.35.0", + "pytest~=8.0", + "pytest-cov~=5.0", + "pytest-env~=1.1", + "moto~=5.0.5", + "esbonio~=0.16.0", +] +docs = [ + "sphinx~=7.3.7", + "sphinx-rtd-theme~=2.0.0", ] -test = ["pytest~=8.0", "pytest-cov~=5.0", "pytest-env~=1.1", "moto~=5.0.5"] [project.urls] Issues = "https://github.com/stac-utils/stactask/issues" @@ -55,7 +74,39 @@ module = ["boto3utils", "jsonpath_ng.ext", "fsspec"] ignore_missing_imports = true [tool.ruff.lint] -select = ["F", "E", "W", "I", "ERA", "RUF"] +# https://docs.astral.sh/ruff/rules/ +select = [ + 'B', + 'BLE', + 'C4', + 'C90', + 'COM', + 'DTZ', + 'E', + 'ERA', + 'F', + 'FA', + 'G', + 'I', + 'INP', + 'N', + 'NPY', + 'PT', + 'PTH', + 'RET', + 'RUF', + 'S', + 'SIM', + 'T20', + 'UP', + 'W', + +] +exclude = ['docs/**/*'] + +[tool.ruff.lint.per-file-ignores] +'__init__.py' = ['E402'] +'tests/**/*' = ['T201', 'S101', 'ERA001'] [tool.pytest.ini_options] addopts = "-rx -q -s -vvv" diff --git a/stactask/__init__.py b/stactask/__init__.py index c59809f..b223835 100644 --- a/stactask/__init__.py +++ b/stactask/__init__.py @@ -1,12 +1,17 @@ -from importlib.metadata import PackageNotFoundError, version - -try: - __version__ = version("stactask") -except PackageNotFoundError: - # package is not installed - pass - from .config import DownloadConfig +from .payload import Payload from .task import Task -__all__ = ["Task", "DownloadConfig"] +try: + from .__version__ import __version__, __version_tuple__ +except ImportError: + __version__ = "0.0.0" + __version_tuple__ = ("0", "0", "0") + +__all__ = [ + "__version__", + "__version_tuple__", + "Task", + "Payload", + "DownloadConfig", +] diff --git a/stactask/asset_io.py b/stactask/asset_io.py index 77d25a6..621536c 100644 --- a/stactask/asset_io.py +++ b/stactask/asset_io.py @@ -1,7 +1,9 @@ import asyncio import logging +from collections.abc import Iterable from os import path as op -from typing import Any, Iterable, Optional, Union +from pathlib import Path +from typing import Any import stac_asset from boto3utils import s3 @@ -19,9 +21,9 @@ async def download_item_assets( item: Item, path_template: str = "${collection}/${id}", - config: Optional[DownloadConfig] = None, + config: DownloadConfig | None = None, keep_non_downloaded: bool = True, - file_name: Optional[str] = "item.json", + file_name: str | None = "item.json", ) -> Item: return await stac_asset.download_item( item=item.clone(), @@ -35,9 +37,9 @@ async def download_item_assets( async def download_items_assets( items: Iterable[Item], path_template: str = "${collection}/${id}", - config: Optional[DownloadConfig] = None, + config: DownloadConfig | None = None, keep_non_downloaded: bool = True, - file_name: Optional[str] = "item.json", + file_name: str | None = "item.json", ) -> list[Item]: return await asyncio.gather( *[ @@ -48,36 +50,36 @@ async def download_items_assets( config=config, keep_non_downloaded=keep_non_downloaded, file_name=file_name, - ) + ), ) for item in items - ] + ], ) def upload_item_assets_to_s3( item: Item, - assets: Optional[list[str]] = None, - public_assets: Union[None, list[str], str] = None, + assets: list[str] | None = None, + public_assets: None | list[str] | str = None, path_template: str = "${collection}/${id}", s3_urls: bool = False, - headers: Optional[dict[str, Any]] = None, - s3_client: Optional[s3] = None, + headers: dict[str, Any] | None = None, + s3_client: s3 | None = None, **kwargs: Any, # unused, but retain to permit unused attributes from upload_options ) -> Item: """Upload Item assets to an S3 bucket Args: item (Item): STAC Item - assets (list[str], optional): List of asset keys to upload. Defaults to None. - public_assets (list[str], optional): List of assets keys that should be - public. Defaults to []. - path_template (str, optional): Path string template. Defaults to + assets (list[str] | None): List of asset keys to upload. Defaults to None. + public_assets (list[str] | None): List of assets keys that should be + public. Defaults to None + path_template (str | None): Path string template. Defaults to '${collection}/${id}'. - s3_urls (bool, optional): Return s3 URLs instead of http URLs. Defaults + s3_urls (bool | None): Return s3 URLs instead of http URLs. Defaults to False. - headers (dict, optional): Dictionary of headers to set on uploaded - assets. Defaults to {}. - s3_client (boto3utils.s3, optional): Use this s3 object instead of the default + headers (dict | None): Dictionary of headers to set on uploaded + assets. Defaults to None. + s3_client (boto3utils.s3 | None): Use this s3 object instead of the default global one. Defaults to None. Returns: Item: A new STAC Item with uploaded assets pointing to newly uploaded file URLs @@ -104,25 +106,29 @@ def upload_item_assets_to_s3( # if assets not provided, upload all assets _assets = assets if assets is not None else _item["assets"].keys() - for key in [a for a in _assets if a in _item["assets"].keys()]: + for key in [a for a in _assets if a in _item["assets"]]: asset = _item["assets"][key] filename = asset["href"] - if not op.exists(filename): - logger.warning(f"Cannot upload {filename}: does not exist") + if not Path(filename).exists(): + logger.warning("Cannot upload %s: does not exist", filename) continue - public = True if key in public_assets else False + public = key in public_assets _headers = {} if "type" in asset: _headers["ContentType"] = asset["type"] _headers.update(headers) # output URL - layout = LayoutTemplate(op.join(path_template, op.basename(filename))) + layout = LayoutTemplate(op.join(path_template, op.basename(filename))) # noqa: PTH118, PTH119 url = layout.substitute(item) # upload - logger.debug(f"Uploading {filename} to {url}") + logger.debug("Uploading %s to %s", filename, url) url_out = s3_client.upload( - filename, url, public=public, extra=_headers, http_url=not s3_urls + filename, + url, + public=public, + extra=_headers, + http_url=not s3_urls, ) _item["assets"][key]["href"] = url_out diff --git a/stactask/config.py b/stactask/config.py index 8ee65ce..69a3f90 100644 --- a/stactask/config.py +++ b/stactask/config.py @@ -4,5 +4,5 @@ @dataclass -class DownloadConfig(Config): # type: ignore +class DownloadConfig(Config): pass diff --git a/stactask/exceptions.py b/stactask/exceptions.py index a236f19..b8a21c0 100644 --- a/stactask/exceptions.py +++ b/stactask/exceptions.py @@ -1,4 +1,4 @@ -class InvalidInput(Exception): +class InvalidInput(Exception): # noqa: N818 """Exception class for when processing fails due to invalid input Args: @@ -8,7 +8,7 @@ class InvalidInput(Exception): pass -class FailedValidation(Exception): +class FailedValidation(Exception): # noqa: N818 """Exception class thrown when input payload does not validate""" pass diff --git a/stactask/logging.py b/stactask/logging.py index aff2aa0..eaf169d 100644 --- a/stactask/logging.py +++ b/stactask/logging.py @@ -1,7 +1,7 @@ from __future__ import annotations import logging -from typing import TYPE_CHECKING, Any, Optional +from typing import TYPE_CHECKING, Any if TYPE_CHECKING: _LoggerAdapter = logging.LoggerAdapter[logging.Logger] # pragma: no cover @@ -10,12 +10,11 @@ class TaskLoggerAdapter(_LoggerAdapter): - def __init__(self, logger: logging.Logger, prefix: Optional[str]) -> None: + def __init__(self, logger: logging.Logger, prefix: str | None) -> None: super().__init__(logger, {}) self.prefix = prefix def process(self, msg: str, kwargs: Any) -> tuple[str, Any]: if self.prefix is not None: return f"[{self.prefix}] {msg}", kwargs - else: - return msg, kwargs + return msg, kwargs diff --git a/stactask/payload.py b/stactask/payload.py new file mode 100644 index 0000000..66c95d2 --- /dev/null +++ b/stactask/payload.py @@ -0,0 +1,163 @@ +import warnings +from typing import Any + + +class Payload(dict[str, Any]): + def validate(self) -> None: + _ = self.process_definition + _ = self.workflow_options + _ = self.task_options_dict + _ = self.upload_options + collection_mapping = self.collection_mapping + _ = self.items_as_dicts + collection_matchers = self.collection_matchers + _ = self.collection_options + + # collection matchers and the legacy collection mapping are mutually exclusive + if collection_matchers and collection_mapping: + raise ValueError( + "A payload must not contain both 'collection_matchers' and the legacy " + "'upload_options.collections'", + ) + + @property + def process_definition(self) -> dict[str, Any]: + process = self.get("process", []) + if isinstance(process, dict): + warnings.warn( + ( + "'process' as a bare dictionary will be unsupported in a future " + "version; wrap it in a list to remove this warning" + ), + DeprecationWarning, + stacklevel=2, + ) + return process + + if not isinstance(process, list): + raise TypeError("unable to parse 'process': must be type list") + + if not process: + return {} + + if not isinstance(process[0], dict): + raise TypeError( + "unable to parse 'process': the first element of the list must be " + "type dict", + ) + + return process[0] + + @property + def workflow_options(self) -> dict[str, Any]: + workflow_options = self.process_definition.get("workflow_options", {}) + if not isinstance(workflow_options, dict): + raise TypeError("unable to parse 'workflow_options': must be type dict") + return workflow_options + + @property + def task_options_dict(self) -> dict[str, dict[str, Any]]: + task_options = self.process_definition.get("tasks", {}) + if not isinstance(task_options, dict | list): + raise TypeError( + "unable to parse 'tasks': must be type dict or type list (deprecated)", + ) + + if isinstance(task_options, list): + warnings.warn( + ( + "'tasks' as a list of TaskConfig objects will be unsupported in a " + "future version; use a dictionary of task options to remove this " + "warning" + ), + DeprecationWarning, + stacklevel=2, + ) + options: dict[str, dict[str, Any]] = {} + for cfg in task_options: + name = cfg["name"] + parameters = cfg.get("parameters", {}) + if not isinstance(parameters, dict): + raise TypeError( + f"unable to parse 'parameters' for task '{name}': " + "must be type dict", + ) + options[name] = parameters + return options + + if isinstance(task_options, dict): + for name, options in task_options.items(): + if not isinstance(options, dict): + raise TypeError( + f"unable to parse options for task '{name}': must be type dict", + ) + return task_options + + return {} + + @property + def items_as_dicts(self) -> list[dict[str, Any]]: + features = self.get("features", []) + if isinstance(features, list): + return features + raise TypeError("unable to parse 'features': must be type list") + + @property + def upload_options(self) -> dict[str, Any]: + upload_options = self.process_definition.get("upload_options", {}) + if isinstance(upload_options, dict): + return upload_options + raise TypeError("unable to parse 'upload_options': must be type dict") + + @property + def collection_mapping(self) -> dict[str, str]: + collection_mapping = self.upload_options.get("collections", {}) + if isinstance(collection_mapping, dict): + warnings.warn( + ( + "'upload_options.collections' is deprecated and will be removed in " + "a future version. Use 'collection_matchers' instead." + ), + DeprecationWarning, + stacklevel=2, + ) + return collection_mapping + raise TypeError("unable to parse 'collections': must be type dict") + + @property + def collection_matchers(self) -> list[dict[str, Any]]: + matchers = self.process_definition.get("collection_matchers", []) + if not isinstance(matchers, list): + raise TypeError("unable to parse 'collection_matchers': must be type list") + if not all(isinstance(matcher, dict) for matcher in matchers): + raise TypeError( + "unable to parse 'collection_matchers': each matcher must be type dict", + ) + return matchers + + @property + def collection_options(self) -> dict[str, dict[str, Any]]: + options = self.process_definition.get("collection_options", {}) + if not isinstance(options, dict): + raise TypeError("unable to parse 'collection_options': must be type dict") + return options + + def get_collection_options(self, collection_name: str) -> dict[str, dict[str, Any]]: + options = self.collection_options.get(collection_name, {}) + if not isinstance(options, dict): + raise TypeError( + f"unable to parse 'collection_options' for collection " + f"'{collection_name}': must be type dict", + ) + return options + + def get_collection_upload_options( + self, + collection_name: str | None, + ) -> dict[str, Any]: + if collection_name is None: + return self.upload_options + return self.get_collection_options(collection_name).get( + "upload_options", + self.upload_options, + ) diff --git a/stactask/task.py b/stactask/task.py index 71b3424..6425df4 100644 --- a/stactask/task.py +++ b/stactask/task.py @@ -2,16 +2,15 @@ import asyncio import json import logging -import os import sys import warnings from abc import ABC, abstractmethod +from collections.abc import Callable, Iterable from copy import deepcopy -from os import makedirs from pathlib import Path from shutil import rmtree from tempfile import mkdtemp -from typing import Any, Callable, Iterable, Optional, Union +from typing import Any import fsspec from boto3utils import s3 @@ -25,38 +24,62 @@ from .config import DownloadConfig from .exceptions import FailedValidation from .logging import TaskLoggerAdapter +from .payload import Payload from .utils import find_collection as utils_find_collection # types -PathLike = Union[str, Path] +PathLike = str | Path class DeprecatedStoreTrueAction(argparse._StoreTrueAction): def __call__(self, parser, namespace, values, option_string=None) -> None: # type: ignore - warnings.warn("Argument %s is deprecated." % self.option_strings) + warnings.warn(f"Argument {self.option_strings} is deprecated.", stacklevel=2) super().__call__(parser, namespace, values, option_string) class Task(ABC): """ - Tasks can use parameters provided in a `process` Dictionary that is supplied in - the ItemCollection JSON under the "process" field. An example process - definition: + Tasks can access input payload configuration in two ways: through properties and + methods on the `self.payload` Payload class (e.g., + `self.payload.collection_options`) or by accessing the underlying dictionary + directly (e.g., `self.payload["process"]["collection_options"]`). ``` { - "description": "My process configuration" + "description": "My process configuration", "upload_options": { "path_template": "s3://my-bucket/${collection}/${year}/${month}/${day}/${id}", - "collections": { - "landsat-c2l2": "" + "public_assets": ["thumbnail", "overview"] + }, + "collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.id =~ 'S2.*')]", + "collection_name": "sentinel-2-l2a" + }, + { + "type": "catch_all", + "collection_name": "default-collection" + } + ], + "collection_options": { + "sentinel-2-l2a": { + "upload_options": { + "path_template": "s3://sentinel-bucket/${collection}/${mgrs:utm_zone}/${mgrs:latitude_band}/${mgrs:grid_square}/${year}/${month}/${id}", + "headers": { + "StorageClass": "INTELLIGENT_TIERING" + } + } } }, "tasks": { "task-name": { "param": "value" } - ] + }, + "workflow_options": { + "global_param": "global_value" + } } ``` """ @@ -68,18 +91,18 @@ class Task(ABC): def __init__( self: "Task", payload: dict[str, Any], - workdir: Optional[PathLike] = None, - save_workdir: Optional[bool] = None, + workdir: PathLike | None = None, + save_workdir: bool | None = None, skip_upload: bool = False, # deprecated skip_validation: bool = False, # deprecated upload: bool = True, validate: bool = True, ): - self._payload = payload + self.payload = Payload(payload) + self.payload.validate() - if not skip_validation and validate: - if not self.validate(): - raise FailedValidation() + if not skip_validation and validate and not self.validate(): + raise FailedValidation() # set instance variables if skip_upload: @@ -96,123 +119,101 @@ def __init__( self._save_workdir = save_workdir if save_workdir is not None else False else: self._workdir = Path(workdir).absolute() - makedirs(self._workdir, exist_ok=True) + self._workdir.mkdir(parents=True, exist_ok=True) # if a workdir was specified we don't want to rm by default self._save_workdir = save_workdir if save_workdir is not None else True self.logger = TaskLoggerAdapter( logging.getLogger(self.name), - self._payload.get("id"), + self.payload.get("id"), ) @property - def process_definition(self) -> dict[str, Any]: - process = self._payload.get("process", []) - if isinstance(process, dict): - warnings.warn( - ( - "`process` as a bare dictionary will be unsupported in a future " - "version; wrap it in a list to remove this warning" - ), - DeprecationWarning, - stacklevel=2, - ) - return process - - if not isinstance(process, list): - raise TypeError("unable to parse `process`: must be type list") - - if not process: - return {} + def _payload(self) -> dict[str, Any]: + warnings.warn( + "`_payload` is deprecated, use `payload` instead", + DeprecationWarning, + stacklevel=2, + ) + return self.payload - if not isinstance(process[0], dict): - raise TypeError( - ( - "unable to parse `process`: the first element of the list must be " - "a dictionary" - ) - ) + @_payload.setter + def _payload(self, value: dict[str, Any]) -> None: + warnings.warn( + "`_payload` is deprecated, use `payload` instead", + DeprecationWarning, + stacklevel=2, + ) + self.payload = Payload(value) - return process[0] + @property + def process_definition(self) -> dict[str, Any]: + warnings.warn( + ( + "`process_definition` is deprecated, " + "use `payload.process_definition` instead" + ), + DeprecationWarning, + stacklevel=2, + ) + return self.payload.process_definition @property def workflow_options(self) -> dict[str, Any]: - workflow_options_ = self.process_definition.get("workflow_options", {}) - if not isinstance(workflow_options_, dict): - raise TypeError("unable to parse `workflow_options`: must be type dict") - return workflow_options_ + warnings.warn( + ( + "`workflow_options` is deprecated, " + "use `payload.workflow_options` instead" + ), + DeprecationWarning, + stacklevel=2, + ) + return self.payload.workflow_options @property def task_options(self) -> dict[str, Any]: - task_options_ = self.process_definition.get("tasks", {}) - if not isinstance(task_options_, (dict, list)): - raise TypeError( - "unable to parse `tasks`: must be type dict or type list (deprecated)" - ) - - if isinstance(task_options_, list): - warnings.warn( - ( - "`tasks` as a list of TaskConfig objects will be unsupported in a " - "future version; use a dictionary of task options to remove this " - "warning" - ), - DeprecationWarning, - stacklevel=2, - ) - task_config_list = [ - cfg for cfg in task_options_ if cfg["name"] == self.name - ] - if len(task_config_list) == 0: - return {} - else: - task_config: dict[str, Any] = task_config_list[0] - parameters = task_config.get("parameters", {}) - if isinstance(parameters, dict): - return parameters - else: - raise TypeError("unable to parse `parameters`: must be type dict") - - if isinstance(task_options_, dict): - options = task_options_.get(self.name, {}) - if isinstance(options, dict): - return options - else: - raise TypeError( - f"unable to parse options for task '{self.name}': must be type dict" - ) + return self.payload.task_options_dict.get(self.name, {}) @property def parameters(self) -> dict[str, Any]: - return {**self.workflow_options, **self.task_options} + return {**self.payload.workflow_options, **self.task_options} @property def upload_options(self) -> dict[str, Any]: - upload_options = self.process_definition.get("upload_options", {}) - if isinstance(upload_options, dict): - return upload_options - else: - raise ValueError(f"upload_options is not a dict: {type(upload_options)}") + warnings.warn( + "`upload_options` is deprecated, use `payload.upload_options` instead", + DeprecationWarning, + stacklevel=2, + ) + return self.payload.upload_options @property def collection_mapping(self) -> dict[str, str]: - collection_mapping = self.upload_options.get("collections", {}) - if isinstance(collection_mapping, dict): - return collection_mapping - else: - raise ValueError(f"collections is not a dict: {type(collection_mapping)}") + warnings.warn( + ( + "`collection_mapping` is deprecated, " + "use `payload.collection_mapping` instead" + ), + DeprecationWarning, + stacklevel=2, + ) + return self.payload.collection_mapping @property def items_as_dicts(self) -> list[dict[str, Any]]: - features = self._payload.get("features", []) - if isinstance(features, list): - return features - else: - raise ValueError(f"features is not a list: {type(features)}") + warnings.warn( + "`items_as_dicts` is deprecated, use `payload.items_as_dicts` instead", + DeprecationWarning, + stacklevel=2, + ) + return self.payload.items_as_dicts @property def items(self) -> ItemCollection: - items_dict = {"type": "FeatureCollection", "features": self.items_as_dicts} + items_dict = { + "type": "FeatureCollection", + "features": self.payload.items_as_dicts, + } return ItemCollection.from_dict(items_dict, preserve_dict=True) @classmethod @@ -221,8 +222,9 @@ def add_software_version(cls, items: list[dict[str, Any]]) -> list[dict[str, Any "add_software_version is deprecated, " "use add_software_version_to_item instead", DeprecationWarning, + stacklevel=2, ) - modified_items = list() + modified_items = [] for item in items: modified_items.append(cls.add_software_version_to_item(item)) return modified_items @@ -252,7 +254,7 @@ def add_software_version_to_item(cls, item: dict[str, Any]) -> dict[str, Any]: return item def validate(self) -> bool: - """Validates `self._payload` and returns True if valid. If invalid, raises + """Validates `self.payload` and returns True if valid. If invalid, raises ``stactask.exceptions.FailedValidation`` or returns False.""" # put validation logic on input Items and process definition here return True @@ -260,32 +262,38 @@ def validate(self) -> bool: def cleanup_workdir(self) -> None: """Remove work directory if configured not to save it""" try: - if ( - not self._save_workdir - and self._workdir - and os.path.exists(self._workdir) - ): + if not self._save_workdir and self._workdir and self._workdir.exists(): self.logger.debug("Removing work directory %s", self._workdir) rmtree(self._workdir) - except Exception as e: + except Exception as e: # noqa: BLE001 self.logger.warning( - "Failed removing work directory %s: %s", self._workdir, e + "Failed removing work directory %s: %s", + self._workdir, + e, ) def assign_collections(self) -> None: - """Assigns new collection names based on upload_options collections attribute - according to the first matching expression in the order they are defined.""" - for item in self._payload["features"]: - if coll := utils_find_collection(self.collection_mapping, item): + """Assigns new collection names based on collection_matchers or the legacy + upload_options collections attribute according to the first matching + expression in the order they are defined.""" + if self.payload.collection_matchers: + collection_config: dict[str, str] | list[dict[str, Any]] = ( + self.payload.collection_matchers + ) + else: + collection_config = self.payload.collection_mapping + + for item in self.payload["features"]: + if coll := utils_find_collection(collection_config, item): item["collection"] = coll def download_item_assets( self, item: Item, path_template: str = "${collection}/${id}", - config: Optional[DownloadConfig] = None, + config: DownloadConfig | None = None, keep_non_downloaded: bool = True, - file_name: Optional[str] = "item.json", + file_name: str | None = "item.json", ) -> Item: """Download provided asset keys for the given item. Assets are saved in workdir in a directory (as specified by path_template), and @@ -293,13 +301,13 @@ def download_item_assets( Args: item (pystac.Item): STAC Item for which assets need be downloaded. - path_template (Optional[str]): String to be interpolated to specify + path_template (str | None): String to be interpolated to specify where to store downloaded files. - config (Optional[DownloadConfig]): Configuration for downloading an item + config (DownloadConfig | None): Configuration for downloading an item and its assets. - keep_original_filenames (Optional[bool]): Controls whether original + keep_original_filenames (bool | None): Controls whether original file names should be used, or asset key + extension. - file_name (Optional[str]): The name of the item file to save. + file_name (str | None): The name of the item file to save. """ return asyncio.get_event_loop().run_until_complete( download_item_assets( @@ -308,16 +316,16 @@ def download_item_assets( config=config, keep_non_downloaded=keep_non_downloaded, file_name=file_name, - ) + ), ) def download_items_assets( self, items: Iterable[Item], path_template: str = "${collection}/${id}", - config: Optional[DownloadConfig] = None, + config: DownloadConfig | None = None, keep_non_downloaded: bool = True, - file_name: Optional[str] = "item.json", + file_name: str | None = "item.json", ) -> list[Item]: """Download provided asset keys for the given items. Assets are saved in workdir in a directory (as specified by path_template), and @@ -326,13 +334,13 @@ def download_items_assets( Args: items (list[pystac.Item]): List of STAC Items for which assets need be downloaded. - path_template (Optional[str]): String to be interpolated to specify + path_template (str | None): String to be interpolated to specify where to store downloaded files. - config (Optional[DownloadConfig]): Configuration for downloading items + config (DownloadConfig | None): Configuration for downloading items and their assets. - keep_original_filenames (Optional[bool]): Controls whether original + keep_original_filenames (bool | None): Controls whether original file names should be used, or asset key + extension. - file_name (Optional[str]): The name of the item file to save. + file_name (str | None): The name of the item file to save. """ return list( asyncio.get_event_loop().run_until_complete( @@ -342,19 +350,25 @@ def download_items_assets( config=config, keep_non_downloaded=keep_non_downloaded, file_name=file_name, - ) - ) + ), + ), ) def upload_item_assets_to_s3( self, item: Item, - assets: Optional[list[str]] = None, - s3_client: Optional[s3] = None, + assets: list[str] | None = None, + s3_client: s3 | None = None, ) -> Item: if self._upload: + upload_options = self.payload.get_collection_upload_options( + item.collection_id, + ) item = upload_item_assets_to_s3( - item=item, assets=assets, s3_client=s3_client, **self.upload_options + item=item, + assets=assets, + s3_client=s3_client, + **upload_options, ) else: self.logger.warning("Skipping upload of new and modified assets") @@ -372,7 +386,7 @@ def _get_local_asset_keys(self, item: Item) -> list[str]: def upload_local_item_assets_to_s3( self, item: Item, - s3_client: Optional[s3] = None, + s3_client: s3 | None = None, ) -> Item: return self.upload_item_assets_to_s3( item=item, @@ -396,7 +410,7 @@ def create_item_from_item(item: dict[str, Any]) -> dict[str, Any]: "rel": "derived_from", "href": links[0], "type": "application/json", - } + }, ) return new_item @@ -417,9 +431,18 @@ def post_process_item(self, item: dict[str, Any]) -> dict[str, Any]: E.g. add software version information. Most tasks should prefer to not override this method, as logic should be - kept in :py:meth:`Task.process`. If you do override this method, make - sure to call ``super().post_process_item()`` AFTER doing any custom - post-processing, so any regular behavior can take your changes into account. + kept in :py:meth:`Task.process`. + + Args: + item: An item produced by :py:meth:`Task.process` + + Returns: + dict[str, Any]: The item with any additional attributes applied. + """ + return item + + def _post_process_item(self, item: dict[str, Any]) -> dict[str, Any]: + """Perform post-processing operations on an item. Args: item: An item produced by :py:meth:`Task.process` @@ -427,9 +450,15 @@ def post_process_item(self, item: dict[str, Any]) -> dict[str, Any]: Returns: dict[str, Any]: The item with any additional attributes applied. """ - assert "stac_extensions" in item - assert isinstance(item["stac_extensions"], list) - item["stac_extensions"].sort() + self.post_process_item(item) + + if "stac_extensions" in item: + if not isinstance(item["stac_extensions"], list): + raise TypeError( + "stac_extensions must be type list, " + f"not type {type(item['stac_extensions'])}", + ) + item["stac_extensions"].sort() return item @classmethod @@ -443,16 +472,16 @@ def handler(cls, payload: dict[str, Any], **kwargs: Any) -> dict[str, Any]: task = cls(payload, **kwargs) try: - items = list() + items = [] for item in task.process(**task.parameters): - items.append(task.post_process_item(item)) + items.append(task._post_process_item(item)) - task._payload["features"] = items + task.payload["features"] = items task.assign_collections() - return task._payload + return task.payload except Exception as err: - task.logger.error(err, exc_info=True) + task.logger.exception(err) raise err finally: if task: @@ -471,7 +500,9 @@ def parse_args(cls, args: list[str]) -> dict[str, Any]: pparser = argparse.ArgumentParser(add_help=False) pparser.add_argument( - "--logging", default="INFO", help="DEBUG, INFO, WARN, ERROR, CRITICAL" + "--logging", + default="INFO", + help="DEBUG, INFO, WARN, ERROR, CRITICAL", ) subparsers = parser0.add_subparsers(dest="command") @@ -629,27 +660,27 @@ def cli(cls) -> None: f.write(json.dumps(payload_out)) -# from https://pythonalgos.com/runtimeerror-event-loop-is-closed-asyncio-fix/ -"""fix yelling at me error""" -from asyncio.proactor_events import _ProactorBasePipeTransport # noqa -from functools import wraps # noqa +if sys.platform == "win32": + from asyncio.proactor_events import _ProactorBasePipeTransport + from functools import wraps + def _silence_event_loop_closed(func: Callable[[Any], Any]) -> Callable[[Any], Any]: + """Suppress 'Event loop is closed' RuntimeError on Windows. -def silence_event_loop_closed(func: Callable[[Any], Any]) -> Callable[[Any], Any]: - @wraps(func) - def wrapper(self, *args: Any, **kwargs: Any) -> Any: # type: ignore - try: - return func(self, *args, **kwargs) - except RuntimeError as e: - if str(e) != "Event loop is closed": - raise + This is a known issue with asyncio on Windows when using the ProactorEventLoop. + See: https://bugs.python.org/issue39232 + """ - return wrapper + @wraps(func) + def wrapper(self, *args, **kwargs): # type: ignore + try: + return func(self, *args, **kwargs) + except RuntimeError as e: + if "Event loop is closed" not in str(e): + raise + return wrapper -setattr( - _ProactorBasePipeTransport, - "__del__", - silence_event_loop_closed(_ProactorBasePipeTransport.__del__), -) -"""fix yelling at me error end""" + _ProactorBasePipeTransport.__del__ = _silence_event_loop_closed( # type: ignore[method-assign] + _ProactorBasePipeTransport.__del__, + ) diff --git a/stactask/utils.py b/stactask/utils.py index ee49c2d..c89504c 100644 --- a/stactask/utils.py +++ b/stactask/utils.py @@ -1,8 +1,14 @@ -from typing import Any, Optional +from enum import Enum +from typing import Any from jsonpath_ng.ext import parser +class MatcherType(str, Enum): + JSONPATH = "jsonpath" + CATCH_ALL = "catch_all" + + def stac_jsonpath_match(item: dict[str, Any], expr: str) -> bool: """Match jsonpath expression against STAC JSON. Use https://jsonpath.com to experiment with JSONpath @@ -21,9 +27,10 @@ def stac_jsonpath_match(item: dict[str, Any], expr: str) -> bool: return len([x.value for x in parser.parse(expr).find([item])]) == 1 -def find_collection( - collection_mapping: dict[str, str], item: dict[str, Any] -) -> Optional[str]: +def _find_collection_from_mapping( + collection_mapping: dict[str, str], + item: dict[str, Any], +) -> str | None: """Find the collection for a given STAC Item represented as a dictionary from a dictionary of collection names to JSONPath expressions. @@ -33,7 +40,7 @@ def find_collection( item (dict): A STAC Item Returns: - Optional[str]: Returns None if no JSONPath expression matches, returns a + str | None: Returns None if no JSONPath expression matches, returns a collection name if one does """ return next( @@ -44,3 +51,64 @@ def find_collection( ), None, ) + + +def _find_collection_from_matchers( + collection_matchers: list[dict[str, Any]], + item: dict[str, Any], +) -> str | None: + """Find the collection for a given STAC Item represented as a dictionary from a + list of collection matcher dictionaries. + + Args: + collection_matchers: List of matcher dictionaries with 'type', + 'collection_name', and 'pattern' (except the 'catch_all' matcher) fields. + item: A STAC Item represented as a dictionary. + + Returns: + str | None: Returns None if no matcher matches, returns a collection + name if one does. + """ + for matcher in collection_matchers: + matcher_type = matcher["type"] + collection_name: str = matcher["collection_name"] + + if matcher_type == MatcherType.JSONPATH: + if stac_jsonpath_match(item, matcher["pattern"]): + return collection_name + elif matcher_type == MatcherType.CATCH_ALL: + return collection_name + else: + raise ValueError(f"Unknown matcher type: {matcher_type}") + + return None + + +def find_collection( + collection_config: dict[str, str] | list[dict[str, Any]], + item: dict[str, Any], +) -> str | None: + """Find the collection for a given STAC Item from either a list of collection + matchers or a legacy collection mapping. + + Args: + collection_config: Either a list of collection matcher dictionaries + (new format) or a dictionary of collection names to JSONPath expressions + (legacy format). + item (dict): A STAC Item represented as a dictionary. + + Returns: + str | None: Returns None if no match is found, returns a collection name if + one is found. + """ + if not collection_config: + return None + + if isinstance(collection_config, dict): + return _find_collection_from_mapping(collection_config, item) + if isinstance(collection_config, list): + return _find_collection_from_matchers(collection_config, item) + raise TypeError( + f"Unsupported collection config type: {type(collection_config)}. " + "Expected dict or list of dicts.", + ) diff --git a/tests/conftest.py b/tests/conftest.py index 6b6c1c1..2d0e81d 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -3,7 +3,10 @@ def pytest_addoption(parser: pytest.Parser) -> None: parser.addoption( - "--runslow", action="store_true", default=False, help="run slow tests" + "--runslow", + action="store_true", + default=False, + help="run slow tests", ) parser.addoption( "--s3-requester-pays", @@ -16,12 +19,14 @@ def pytest_addoption(parser: pytest.Parser) -> None: def pytest_configure(config: pytest.Config) -> None: config.addinivalue_line("markers", "slow: mark test as slow to run") config.addinivalue_line( - "markers", "s3_requester_pays: mark test as requiring s3 requester pays to run" + "markers", + "s3_requester_pays: mark test as requiring s3 requester pays to run", ) def pytest_collection_modifyitems( - config: pytest.Config, items: list[pytest.Item] + config: pytest.Config, + items: list[pytest.Item], ) -> None: if not config.getoption("--runslow"): skip_slow = pytest.mark.skip(reason="need --runslow option to run") @@ -30,7 +35,7 @@ def pytest_collection_modifyitems( item.add_marker(skip_slow) if not config.getoption("--s3-requester-pays"): skip_s3_requestor_pays = pytest.mark.skip( - reason="need --s3-requester-pays option to run" + reason="need --s3-requester-pays option to run", ) for item in items: if "s3_requester_pays" in item.keywords: diff --git a/tests/test_payload.py b/tests/test_payload.py new file mode 100644 index 0000000..8b5e679 --- /dev/null +++ b/tests/test_payload.py @@ -0,0 +1,553 @@ +from typing import Any + +import pytest + +from stactask.payload import Payload + +# Test Fixtures + + +@pytest.fixture +def legacy_payload() -> dict[str, Any]: + """Legacy payload using upload_options.collections.""" + return { + "features": [ + { + "id": "S2A_test", + "type": "Feature", + "properties": {"mission": "sentinel"}, + }, + {"id": "L8_test", "type": "Feature", "properties": {"mission": "landsat"}}, + ], + "process": [ + { + "workflow": "test-workflow", + "workflow_options": {"global_param": "global_value"}, + "upload_options": { + "path_template": "/legacy/${collection}/${id}", + "collections": { + "sentinel-2": "$[?(@.id =~ 'S2[AB].*')]", + "landsat-8": "$[?(@.id =~ 'L8.*')]", + }, + }, + "tasks": { + "task-a": {"param_a": "value_a"}, + "task-b": {"param_b": "value_b"}, + }, + }, + ], + } + + +@pytest.fixture +def new_payload() -> dict[str, Any]: + """New payload using collection_matchers and collection_options.""" + return { + "features": [ + { + "id": "sentinel-item", + "type": "Feature", + "properties": {"mission": "sentinel"}, + }, + { + "id": "landsat-item", + "type": "Feature", + "properties": {"mission": "landsat"}, + }, + { + "id": "unknown-item", + "type": "Feature", + "properties": {"mission": "modis"}, + }, + ], + "process": [ + { + "workflow": "new-workflow", + "workflow_options": {"new_global_param": "new_global_value"}, + "upload_options": {"path_template": "/global/${collection}/${id}"}, + "collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.properties.mission == 'sentinel')]", + "collection_name": "sentinel-collection", + }, + { + "type": "jsonpath", + "pattern": "$[?(@.properties.mission == 'landsat')]", + "collection_name": "landsat-collection", + }, + {"type": "catch_all", "collection_name": "default-collection"}, + ], + "collection_options": { + "sentinel-collection": { + "upload_options": {"path_template": "/sentinel/${id}"}, + }, + "landsat-collection": { + "upload_options": {"path_template": "/landsat/${id}"}, + }, + "default-collection": { + "upload_options": {"path_template": "/default/${id}"}, + }, + }, + "tasks": { + "new-task-a": {"new_param_a": "new_value_a"}, + "new-task-b": {"new_param_b": "new_value_b"}, + }, + }, + ], + } + + +@pytest.fixture +def payload_missing_both_collection_configs() -> dict[str, Any]: + """Payload missing both collection_matchers and legacy collections.""" + return { + "features": [{"id": "test-item", "type": "Feature"}], + "process": [ + { + "workflow": "test-workflow", + "upload_options": {"path_template": "/test/${id}"}, + "tasks": {"test-task": {}}, + }, + ], + } + + +@pytest.fixture +def payload_with_both_collection_configs() -> dict[str, Any]: + """Payload with both collection_matchers and legacy collections.""" + return { + "features": [{"id": "test-item", "type": "Feature"}], + "process": [ + { + "workflow": "test-workflow", + "upload_options": { + "path_template": "/test/${id}", + "collections": {"test-collection": "$[?(@.id == 'test-item')]"}, + }, + "collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.id == 'test-item')]", + "collection_name": "test-collection", + }, + ], + "tasks": {"test-task": {}}, + }, + ], + } + + +@pytest.fixture +def payload_collection_missing_upload_options() -> dict[str, Any]: + """Payload with collection matcher and global upload options but missing upload + options for collection.""" + return { + "features": [{"id": "test-item", "type": "Feature"}], + "process": [ + { + "workflow": "test-workflow", + "upload_options": {"path_template": "/global/${id}"}, + "collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.id == 'test-item')]", + "collection_name": "missing-options-collection", + }, + ], + "tasks": {"test-task": {}}, + }, + ], + } + + +@pytest.fixture +def payload_collection_missing_upload_options_and_global_upload_options() -> ( + dict[str, Any] +): + """Payload with collection matcher but missing global upload options and upload + options for collection.""" + return { + "features": [{"id": "test-item", "type": "Feature"}], + "process": [ + { + "workflow": "test-workflow", + "collection_matchers": [ + { + "type": "jsonpath", + "pattern": "$[?(@.id == 'test-item')]", + "collection_name": "missing-options-collection", + }, + ], + "tasks": {"test-task": {}}, + }, + ], + } + + +# 1. Payload Class Instantiation and Validation Tests + + +def test_payload_instantiation_and_validation_legacy( + legacy_payload: dict[str, Any], +) -> None: + """Test validation method with legacy format.""" + payload = Payload(legacy_payload) + # Should not raise any exception + payload.validate() + + +def test_payload_instantiation_and_validation_new( + new_payload: dict[str, Any], +) -> None: + """Test validation method with new format.""" + payload = Payload(new_payload) + # Should not raise any exception + payload.validate() + + +def test_validation_both_collection_configs_present( + payload_with_both_collection_configs: dict[str, Any], +) -> None: + """Test validation fails when both collection collection_matchers and legacy + upload_options.collections are present.""" + payload = Payload(payload_with_both_collection_configs) + + expected_msg = ( + "A payload must not contain both 'collection_matchers' and the legacy " + "'upload_options.collections'" + ) + with pytest.raises(ValueError, match=expected_msg): + payload.validate() + + +def test_validation_collection_missing_upload_options( + payload_collection_missing_upload_options: dict[str, Any], +) -> None: + """Test validation calls get_collection_upload_options for each collection.""" + payload = Payload(payload_collection_missing_upload_options) + + # This should not raise an error because get_collection_upload_options + # will fall back to global upload options if collection-specific options are missing + payload.validate() + + +# 2. Payload Properties Tests + + +def test_process_definition_legacy(legacy_payload: dict[str, Any]) -> None: + """Test process_definition property with legacy format.""" + payload = Payload(legacy_payload) + process_def = payload.process_definition + assert process_def == legacy_payload["process"][0] + + +def test_process_definition_new(new_payload: dict[str, Any]) -> None: + """Test process_definition property with new format.""" + payload = Payload(new_payload) + process_def = payload.process_definition + assert process_def == new_payload["process"][0] + + +def test_workflow_options_legacy(legacy_payload: dict[str, Any]) -> None: + """Test workflow_options property with legacy format.""" + payload = Payload(legacy_payload) + expected = legacy_payload["process"][0]["workflow_options"] + assert payload.workflow_options == expected + + +def test_workflow_options_new(new_payload: dict[str, Any]) -> None: + """Test workflow_options property with new format.""" + payload = Payload(new_payload) + expected = new_payload["process"][0]["workflow_options"] + assert payload.workflow_options == expected + + +def test_task_options_dict_legacy(legacy_payload: dict[str, Any]) -> None: + """Test task_options_dict property with legacy format.""" + payload = Payload(legacy_payload) + expected = legacy_payload["process"][0]["tasks"] + assert payload.task_options_dict == expected + + +def test_task_options_dict_new(new_payload: dict[str, Any]) -> None: + """Test task_options_dict property with new format.""" + payload = Payload(new_payload) + expected = new_payload["process"][0]["tasks"] + assert payload.task_options_dict == expected + + +def test_items_as_dicts_legacy(legacy_payload: dict[str, Any]) -> None: + """Test items_as_dicts property with legacy format.""" + payload = Payload(legacy_payload) + expected = legacy_payload["features"] + assert payload.items_as_dicts == expected + + +def test_items_as_dicts_new(new_payload: dict[str, Any]) -> None: + """Test items_as_dicts property with new format.""" + payload = Payload(new_payload) + expected = new_payload["features"] + assert payload.items_as_dicts == expected + + +def test_upload_options_legacy(legacy_payload: dict[str, Any]) -> None: + """Test upload_options property with legacy format.""" + payload = Payload(legacy_payload) + expected = legacy_payload["process"][0]["upload_options"] + assert payload.upload_options == expected + + +def test_upload_options_new(new_payload: dict[str, Any]) -> None: + """Test upload_options property with new format.""" + payload = Payload(new_payload) + expected = new_payload["process"][0]["upload_options"] + assert payload.upload_options == expected + + +def test_collection_mapping_legacy(legacy_payload: dict[str, Any]) -> None: + """Test collection_mapping property with legacy format.""" + payload = Payload(legacy_payload) + expected = legacy_payload["process"][0]["upload_options"]["collections"] + assert payload.collection_mapping == expected + + +def test_collection_mapping_new(new_payload: dict[str, Any]) -> None: + """Test collection_mapping property with new format (should be empty).""" + payload = Payload(new_payload) + assert payload.collection_mapping == {} + + +def test_collection_matchers_legacy(legacy_payload: dict[str, Any]) -> None: + """Test collection_matchers property with legacy format (should be empty).""" + payload = Payload(legacy_payload) + assert payload.collection_matchers == [] + + +def test_collection_matchers_new(new_payload: dict[str, Any]) -> None: + """Test collection_matchers property with new format.""" + payload = Payload(new_payload) + expected = new_payload["process"][0]["collection_matchers"] + assert payload.collection_matchers == expected + + +def test_collection_options_legacy(legacy_payload: dict[str, Any]) -> None: + """Test collection_options property with legacy format (should be empty).""" + payload = Payload(legacy_payload) + assert payload.collection_options == {} + + +def test_collection_options_new(new_payload: dict[str, Any]) -> None: + """Test collection_options property with new format.""" + payload = Payload(new_payload) + expected = new_payload["process"][0]["collection_options"] + assert payload.collection_options == expected + + +# 3. Payload Methods Tests + + +def test_get_collection_options_legacy(legacy_payload: dict[str, Any]) -> None: + """Test get_collection_options method with legacy format.""" + payload = Payload(legacy_payload) + + # Should return empty dict for any collection name in legacy format + assert payload.get_collection_options("sentinel-2") == {} + assert payload.get_collection_options("nonexistent") == {} + + +def test_get_collection_options_new(new_payload: dict[str, Any]) -> None: + """Test get_collection_options method with new format.""" + payload = Payload(new_payload) + + # Test existing collection + collection_options = new_payload["process"][0]["collection_options"] + expected = collection_options["sentinel-collection"] + assert payload.get_collection_options("sentinel-collection") == expected + + # Test nonexistent collection + assert payload.get_collection_options("nonexistent") == {} + + +def test_get_collection_upload_options_legacy( + legacy_payload: dict[str, Any], +) -> None: + """Test get_collection_upload_options method with legacy format.""" + payload = Payload(legacy_payload) + + # Should return global upload options for any collection + expected = legacy_payload["process"][0]["upload_options"] + assert payload.get_collection_upload_options("sentinel-2") == expected + assert payload.get_collection_upload_options("nonexistent") == expected + + +def test_get_collection_upload_options_new(new_payload: dict[str, Any]) -> None: + """Test get_collection_upload_options method with new format.""" + payload = Payload(new_payload) + + # Test collection with specific upload options + collection_options = new_payload["process"][0]["collection_options"] + expected_sentinel = collection_options["sentinel-collection"]["upload_options"] + result = payload.get_collection_upload_options("sentinel-collection") + assert result == expected_sentinel + + # Test collection falling back to global options + expected_global = new_payload["process"][0]["upload_options"] + assert payload.get_collection_upload_options("nonexistent") == expected_global + + +# 4. Expected Payload Property Errors Tests + + +def test_process_definition_error_not_list(new_payload: dict[str, Any]) -> None: + """Test process_definition raises TypeError when process is not list or dict.""" + new_payload["process"] = "invalid_process" + payload = Payload(new_payload) + + expected_msg = "unable to parse 'process': must be type list" + with pytest.raises(TypeError, match=expected_msg): + _ = payload.process_definition + + +def test_process_definition_error_first_not_dict(new_payload: dict[str, Any]) -> None: + """Test process_definition raises TypeError when first element is not dict.""" + new_payload["process"] = ["not_a_dict"] + payload = Payload(new_payload) + + expected_msg = ( + "unable to parse 'process': the first element of the list must be type dict" + ) + with pytest.raises(TypeError, match=expected_msg): + _ = payload.process_definition + + +def test_workflow_options_error_not_dict(new_payload: dict[str, Any]) -> None: + """Test workflow_options raises TypeError when not dict.""" + new_payload["process"][0]["workflow_options"] = "not_a_dict" + payload = Payload(new_payload) + + expected_msg = "unable to parse 'workflow_options': must be type dict" + with pytest.raises(TypeError, match=expected_msg): + _ = payload.workflow_options + + +def test_task_options_dict_error_not_dict_or_list(new_payload: dict[str, Any]) -> None: + """Test task_options_dict raises TypeError when not dict or list.""" + new_payload["process"][0]["tasks"] = "not_dict_or_list" + payload = Payload(new_payload) + + expected_msg = "unable to parse 'tasks': must be type dict or type list" + with pytest.raises(TypeError, match=expected_msg): + _ = payload.task_options_dict + + +def test_task_options_dict_error_params_not_dict(new_payload: dict[str, Any]) -> None: + """Test task_options_dict raises TypeError when parameters not dict.""" + new_payload["process"][0]["tasks"] = [ + {"name": "test-task", "parameters": "not_a_dict"}, + ] + payload = Payload(new_payload) + + expected_msg = ( + "unable to parse 'parameters' for task 'test-task': must be type dict" + ) + with pytest.raises(TypeError, match=expected_msg): + _ = payload.task_options_dict + + +def test_task_options_dict_error_options_not_dict(new_payload: dict[str, Any]) -> None: + """Test task_options_dict raises TypeError when task options not dict.""" + new_payload["process"][0]["tasks"] = {"test-task": "not_a_dict"} + payload = Payload(new_payload) + + expected_msg = "unable to parse options for task 'test-task': must be type dict" + with pytest.raises(TypeError, match=expected_msg): + _ = payload.task_options_dict + + +def test_items_as_dicts_error_features_not_list(new_payload: dict[str, Any]) -> None: + """Test items_as_dicts raises ValueError when features not list.""" + new_payload["features"] = "not_a_list" + payload = Payload(new_payload) + + with pytest.raises( + TypeError, + match="unable to parse 'features': must be type list", + ): + _ = payload.items_as_dicts + + +def test_upload_options_error_not_dict(new_payload: dict[str, Any]) -> None: + """Test upload_options raises ValueError when upload_options not dict.""" + new_payload["process"][0]["upload_options"] = "not_a_dict" + payload = Payload(new_payload) + + with pytest.raises( + TypeError, + match="unable to parse 'upload_options': must be type dict", + ): + _ = payload.upload_options + + +def test_collection_mapping_error_not_dict(legacy_payload: dict[str, Any]) -> None: + """Test collection_mapping raises ValueError when collections not dict.""" + legacy_payload["process"][0]["upload_options"]["collections"] = "not_a_dict" + payload = Payload(legacy_payload) + + with pytest.raises( + TypeError, + match="unable to parse 'collections': must be type dict", + ): + _ = payload.collection_mapping + + +def test_collection_matchers_error_not_list(new_payload: dict[str, Any]) -> None: + """Test collection_matchers raises TypeError when not list.""" + new_payload["process"][0]["collection_matchers"] = "not_a_list" + payload = Payload(new_payload) + + with pytest.raises( + TypeError, + match="unable to parse 'collection_matchers': must be type list", + ): + _ = payload.collection_matchers + + +def test_collection_matchers_error_not_dicts(new_payload: dict[str, Any]) -> None: + """Test collection_matchers raises TypeError when matchers not dicts.""" + new_payload["process"][0]["collection_matchers"] = ["not_a_dict"] + payload = Payload(new_payload) + + with pytest.raises( + TypeError, + match="unable to parse 'collection_matchers': each matcher must be type dict", + ): + _ = payload.collection_matchers + + +def test_collection_options_error_not_dict(new_payload: dict[str, Any]) -> None: + """Test collection_options raises TypeError when not dict.""" + new_payload["process"][0]["collection_options"] = "not_a_dict" + payload = Payload(new_payload) + + with pytest.raises( + TypeError, + match="unable to parse 'collection_options': must be type dict", + ): + _ = payload.collection_options + + +# 5. Expected Payload Method Errors Tests + + +def test_get_collection_options_error_not_dict(new_payload: dict[str, Any]) -> None: + """Test get_collection_options raises TypeError when collection options not dict.""" + new_payload["process"][0]["collection_options"]["test-collection"] = "not_a_dict" + payload = Payload(new_payload) + + expected_msg = ( + "unable to parse 'collection_options' for collection 'test-collection': " + "must be type dict" + ) + with pytest.raises(TypeError, match=expected_msg): + payload.get_collection_options("test-collection") diff --git a/tests/test_task.py b/tests/test_task.py index cba6594..c6d7b48 100644 --- a/tests/test_task.py +++ b/tests/test_task.py @@ -1,10 +1,12 @@ #!/usr/bin/env python import json +from collections.abc import Callable from pathlib import Path -from typing import Any, Optional +from typing import Any import boto3 import pytest +from boto3utils import s3 from moto import mock_aws from pystac import Asset @@ -20,7 +22,7 @@ @pytest.fixture def payload() -> dict[str, Any]: filename = testpath / "fixtures" / "sentinel2-l2a-j2k-payload.json" - with open(filename) as f: + with filename.open() as f: payload = json.loads(f.read()) assert isinstance(payload, dict) return payload @@ -36,6 +38,24 @@ def derived_item_task(payload: dict[str, Any]) -> Task: return DerivedItemTask(payload) +@pytest.fixture +def mock_s3_client() -> Callable[[], s3]: + """Recreate the global S3 client within mock context to avoid state pollution. + + This fixture must be called from within a mock_aws context. + """ + from boto3utils import s3 + + from stactask import asset_io + + # This will be called during test execution, when mock is active + def _recreate_client() -> s3: + asset_io.global_s3_client = s3() + return asset_io.global_s3_client + + return _recreate_client + + def test_task_init(nothing_task: Task) -> None: assert len(nothing_task._payload["features"]) == 2 assert len(nothing_task.items) == 2 @@ -51,12 +71,12 @@ def test_failed_validation(payload: dict[str, Any]) -> None: def test_deprecated_payload_dict(nothing_task: Task) -> None: nothing_task._payload["process"] = nothing_task._payload["process"][0] with pytest.warns(DeprecationWarning): - nothing_task.process_definition + _ = nothing_task.process_definition def test_workflow_options_append_task_options(nothing_task: Task) -> None: nothing_task._payload["process"][0]["workflow_options"] = { - "workflow_option": "workflow_option_value" + "workflow_option": "workflow_option_value", } parameters = nothing_task.parameters assert parameters == { @@ -68,7 +88,7 @@ def test_workflow_options_append_task_options(nothing_task: Task) -> None: def test_workflow_options_populate_when_no_task_options(nothing_task: Task) -> None: nothing_task._payload["process"][0]["tasks"].pop("nothing-task") nothing_task._payload["process"][0]["workflow_options"] = { - "workflow_option": "workflow_option_value" + "workflow_option": "workflow_option_value", } parameters = nothing_task.parameters assert parameters == { @@ -98,7 +118,7 @@ def test_edit_items2(nothing_task: Task) -> None: @pytest.mark.parametrize("save_workdir", [False, True, None]) -def test_tmp_workdir(payload: dict[str, Any], save_workdir: Optional[bool]) -> None: +def test_tmp_workdir(payload: dict[str, Any], save_workdir: bool | None) -> None: t = NothingTask(payload, save_workdir=save_workdir) expected = save_workdir if save_workdir is not None else False assert t._save_workdir is expected @@ -114,7 +134,7 @@ def test_tmp_workdir(payload: dict[str, Any], save_workdir: Optional[bool]) -> N def test_workdir( payload: dict[str, Any], tmp_path: Path, - save_workdir: Optional[bool], + save_workdir: bool | None, ) -> None: t = NothingTask(payload, workdir=tmp_path / "test_task", save_workdir=save_workdir) expected = save_workdir if save_workdir is not None else True @@ -224,12 +244,12 @@ def test_parse_args_upload_and_validation() -> None: def test_collection_mapping(nothing_task: Task) -> None: assert nothing_task.collection_mapping == { - "sentinel-2-l2a": "$[?(@.id =~ 'S2[AB].*')]" + "sentinel-2-l2a": "$[?(@.id =~ 'S2[AB].*')]", } -@mock_aws # type: ignore -def test_s3_upload(nothing_task: Task) -> None: +@mock_aws +def test_s3_upload(nothing_task: Task, mock_s3_client: Callable[[], s3]) -> None: # start S3 mocks s3_client = boto3.client("s3") s3_client.create_bucket( @@ -238,6 +258,8 @@ def test_s3_upload(nothing_task: Task) -> None: "LocationConstraint": "us-west-2", }, ) + # Recreate global s3 client within mock context + mock_s3_client() # end S3 mocks item = nothing_task.items.items[0] diff --git a/tests/test_task_download.py b/tests/test_task_download.py index 50f927c..8f0b61b 100644 --- a/tests/test_task_download.py +++ b/tests/test_task_download.py @@ -1,5 +1,4 @@ import json -import os from pathlib import Path from typing import Any @@ -15,7 +14,7 @@ def item_collection() -> dict[str, Any]: name = "sentinel2-l2a-j2k-payload" filename = Path(__file__).parent / "fixtures" / f"{name}.json" - with open(filename) as f: + with Path.open(filename) as f: items = json.loads(f.read()) assert isinstance(items, dict) return items @@ -28,7 +27,8 @@ def test_download_nosuch_asset(tmp_path: Path, item_collection: dict[str, Any]) save_workdir=True, ) item = t.download_item_assets( - t.items[0], config=DownloadConfig(include=["nosuch_asset"]) + t.items[0], + config=DownloadConfig(include=["nosuch_asset"]), ) # new item has same assets hrefs as old item @@ -38,7 +38,8 @@ def test_download_nosuch_asset(tmp_path: Path, item_collection: dict[str, Any]) def test_download_asset_dont_keep_existing( - tmp_path: Path, item_collection: dict[str, Any] + tmp_path: Path, + item_collection: dict[str, Any], ) -> None: t = NothingTask( item_collection, @@ -59,13 +60,17 @@ def test_download_asset_dont_keep_existing( def test_download_item_asset(tmp_path: Path, item_collection: dict[str, Any]) -> None: t = NothingTask(item_collection, workdir=tmp_path / "test-task-download-item-asset") item = t.download_item_assets( - t.items[0], config=DownloadConfig(include=["tileinfo_metadata"]) + t.items[0], + config=DownloadConfig(include=["tileinfo_metadata"]), ) - assert Path(item.assets["tileinfo_metadata"].get_absolute_href()).is_file() + href = item.assets["tileinfo_metadata"].get_absolute_href() + assert href is not None + assert Path(href).is_file() def test_download_keep_original_filenames( - tmp_path: Path, item_collection: dict[str, Any] + tmp_path: Path, + item_collection: dict[str, Any], ) -> None: t = NothingTask( item_collection, @@ -84,15 +89,17 @@ def test_download_keep_original_filenames( def test_download_item_asset_local( - tmp_path: Path, item_collection: dict[str, Any] + tmp_path: Path, + item_collection: dict[str, Any], ) -> None: t = NothingTask(item_collection, workdir=tmp_path / "test-task-download-item-asset") item = t.download_item_assets( - t.items[0], config=DownloadConfig(include=["tileinfo_metadata"]) + t.items[0], + config=DownloadConfig(include=["tileinfo_metadata"]), ) assert ( - Path(os.path.dirname(item.self_href)) / item.assets["tileinfo_metadata"].href + Path(Path(item.self_href).parent) / item.assets["tileinfo_metadata"].href ).is_file() # Downloaded to local, as in prev test. @@ -104,6 +111,7 @@ def test_download_item_asset_local( ) assert "again" in item.self_href href = item.assets["tileinfo_metadata"].get_absolute_href() + assert href is not None assert "again" in href assert Path(href).is_file() @@ -120,8 +128,12 @@ def test_download_item_assets(tmp_path: Path, item_collection: dict[str, Any]) - config=DownloadConfig(include=["tileinfo_metadata", "granule_metadata"]), ) - assert Path(item.assets["tileinfo_metadata"].get_absolute_href()).is_file() - assert Path(item.assets["granule_metadata"].get_absolute_href()).is_file() + href = item.assets["tileinfo_metadata"].get_absolute_href() + assert href is not None + assert Path(href).is_file() + href = item.assets["granule_metadata"].get_absolute_href() + assert href is not None + assert Path(href).is_file() def test_download_items_assets(tmp_path: Path, item_collection: dict[str, Any]) -> None: @@ -135,7 +147,9 @@ def test_download_items_assets(tmp_path: Path, item_collection: dict[str, Any]) assert len(items) == 2 for item in items: - assert Path(item.assets[asset_key].get_absolute_href()).is_file() + href = item.assets[asset_key].get_absolute_href() + assert href is not None + assert Path(href).is_file() # @vcr.use_cassette(str(cassettepath / 'download_assets')) @@ -147,7 +161,10 @@ def test_download_large_asset(tmp_path: Path, item_collection: dict[str, Any]) - save_workdir=True, ) item = t.download_item_assets( - t.items[0], config=DownloadConfig(s3_requester_pays=True, include=["red"]) + t.items[0], + config=DownloadConfig(s3_requester_pays=True, include=["red"]), ) - assert Path(item.assets["red"].get_absolute_href()).is_file() + href = item.assets["red"].get_absolute_href() + assert href is not None + assert Path(href).is_file() diff --git a/tests/test_utils.py b/tests/test_utils.py index 7dfaf69..4b073d0 100644 --- a/tests/test_utils.py +++ b/tests/test_utils.py @@ -22,11 +22,12 @@ def test_stac_jsonpath_match() -> None: ) -def test_find_collection() -> None: +def test_find_collection_with_mapping() -> None: assert find_collection({"a": "$[?(@.id =~ '.*')]"}, {"id": "1"}) == "a" assert ( find_collection( - {"a": "$[?(@.id == '1')]", "b": "$[?(@.id == '2')]"}, {"id": "2"} + {"a": "$[?(@.id == '1')]", "b": "$[?(@.id == '2')]"}, + {"id": "2"}, ) == "b" ) @@ -50,3 +51,70 @@ def test_find_collection() -> None: ) == "sentinel-2-c1-l2a" ) + + +def test_find_collection_with_jsonpath_matchers() -> None: + """Test new list format with jsonpath matchers.""" + matchers = [ + { + "type": "jsonpath", + "pattern": "$[?(@.id == 'test-item')]", + "collection_name": "test-collection", + }, + { + "type": "jsonpath", + "pattern": "$[?(@.id == 'other-item')]", + "collection_name": "other-collection", + }, + ] + + assert find_collection(matchers, {"id": "test-item"}) == "test-collection" + assert find_collection(matchers, {"id": "other-item"}) == "other-collection" + assert find_collection(matchers, {"id": "unknown-item"}) is None + + +def test_find_collection_with_catch_all_matcher() -> None: + """Test catch_all matcher type.""" + matchers = [{"type": "catch_all", "collection_name": "default-collection"}] + + assert find_collection(matchers, {"id": "any-item"}) == "default-collection" + assert find_collection(matchers, {}) == "default-collection" + + +def test_find_collection_mixed_matcher_types() -> None: + """Test combination of jsonpath + catch_all.""" + matchers = [ + { + "type": "jsonpath", + "pattern": "$[?(@.id == 'first-item')]", + "collection_name": "first-collection", + }, + { + "type": "jsonpath", + "pattern": "$[?(@.id == 'second-item')]", + "collection_name": "second-collection", + }, + {"type": "catch_all", "collection_name": "unknown-collection"}, + ] + + assert find_collection(matchers, {"id": "first-item"}) == "first-collection" + assert find_collection(matchers, {"id": "second-item"}) == "second-collection" + assert find_collection(matchers, {"id": "third-item"}) == "unknown-collection" + + +def test_find_collection_empty_matchers_list() -> None: + """Test empty list returns None.""" + assert find_collection([], {"id": "any-item"}) is None + + +def test_find_collection_no_matchers_match() -> None: + """Test no match returns None.""" + matchers = [ + { + "type": "jsonpath", + "pattern": "$[?(@.id == 'specific-item')]", + "collection_name": "specific-collection", + }, + ] + + assert find_collection(matchers, {"id": "different-item"}) is None diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..18a6283 --- /dev/null +++ b/uv.lock @@ -0,0 +1,2185 @@ +version = 1 +requires-python = ">=3.10" + +[[package]] +name = "aiobotocore" +version = "2.24.2" +source = { registry = "https://pypi.org/simple" 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