Import typing.SupportsIndex to avoid forward reference error.

Author: tomwhite

setup.cfg

@@ -144,6 +144,9 @@ ignore_missing_imports = True
 ignore_missing_imports = True
 [mypy-sgkit.*]
 allow_redefinition = True
+[mypy-sgkit.io.bgen.*]
+# avoid warning on unused ignore for Python 3.8, but not unused for 3.7
+warn_unused_ignores = False
 [mypy-sgkit.*.tests.*]
 disallow_untyped_defs = False
 disallow_untyped_decorators = False

sgkit/io/bgen/bgen_reader.py

@@ -31,6 +31,13 @@
 from sgkit.io.utils import dataframe_to_dict, encode_contigs
 from sgkit.typing import ArrayLike, PathType
 
+try:
+    # needed to avoid Sphinx forward reference error for DTypeLike
+    # try block is needed since SupportsIndex is in Python 3.7
+    from typing import SupportsIndex  # type: ignore # noqa: F401
+except ImportError:  # pragma: no cover
+    pass
+
 logger = logging.getLogger(__name__)
 
 GT_DATA_VARS = [