From df601786cce9cfae83ba3896fc152003898c6915 Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 13:57:36 +0200
Subject: [PATCH 1/9] Add linter for RST

---
 .github/workflows/linst-rst.yml | 16 +++++++++++
 azure-pipelines.yml             | 50 +++++++++++++++++++++++++++++++--
 2 files changed, 63 insertions(+), 3 deletions(-)
 create mode 100644 .github/workflows/linst-rst.yml

diff --git a/.github/workflows/linst-rst.yml b/.github/workflows/linst-rst.yml
new file mode 100644
index 0000000..f207e47
--- /dev/null
+++ b/.github/workflows/linst-rst.yml
@@ -0,0 +1,16 @@
+# .github/workflows/lint.yaml
+name: RST Format Checker
+on: [push, pull_request]
+
+jobs:
+    doctor-rst:
+        name: DOCtor-RST
+        runs-on: ubuntu-latest
+        steps:
+            - name: "Checkout code"
+              uses: actions/checkout@v2
+
+            - name: DOCtor-RST
+              uses: docker://oskarstark/doctor-rst
+              with:
+                  args: --short --error-format=github
diff --git a/azure-pipelines.yml b/azure-pipelines.yml
index 9984f21..4c4c7e8 100644
--- a/azure-pipelines.yml
+++ b/azure-pipelines.yml
@@ -1,11 +1,55 @@
 jobs:
+- job: 'TestLinuxWheelPip'
+  pool:
+    vmImage: 'ubuntu-latest'
+  strategy:
+    matrix:
+      Python311-Linux:
+        python.version: '3.11'
+    maxParallel: 3
+
+  steps:
+  - task: UsePythonVersion@0
+    inputs:
+      versionSpec: '$(python.version)'
+      architecture: 'x64'
+  - script: sudo apt-get update
+    displayName: 'AptGet Update'
+  - script: sudo apt-get install -y graphviz
+    displayName: 'Install Graphviz'
+  - script: python -m pip install --upgrade pip setuptools wheel
+    displayName: 'Install tools'
+  - script: pip install -r requirements.txt
+    displayName: 'Install Requirements'
+  - script: pip install -r requirements-dev.txt
+    displayName: 'Install Requirements dev'
+  - script: |
+      ruff .
+    displayName: 'Ruff'
+  - script: |
+      black --diff .
+    displayName: 'Black'
+  - script: |
+      python -m pip wheel . --wheel-dir dist -v -v -v
+    displayName: 'build wheel'
+  - script: |
+      python -m pip install . -v -v -v
+    displayName: 'install wheel'
+  - script: |
+      python -m pytest -v
+    displayName: 'Runs Unit Tests'
+  - task: PublishPipelineArtifact@0
+    inputs:
+      artifactName: 'wheel-linux-wheel-$(python.version)'
+      targetPath: 'dist'
+
 - job: 'TestLinux'
   pool:
     vmImage: 'ubuntu-latest'
   strategy:
     matrix:
       Python310-Linux:
-        python.version: '3.10'
+        python.version: '3.11'
     maxParallel: 3
 
   steps:
@@ -55,7 +99,7 @@ jobs:
   strategy:
     matrix:
       Python310-Windows:
-        python.version: '3.10'
+        python.version: '3.11'
     maxParallel: 3
 
   steps:
@@ -88,7 +132,7 @@ jobs:
   strategy:
     matrix:
       Python310-Mac:
-        python.version: '3.10'
+        python.version: '3.11'
     maxParallel: 3
 
   steps:

From ca851211711f6b9c1d25c53013739f1e3c93d7be Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 14:00:24 +0200
Subject: [PATCH 2/9] update actions

---
 .github/workflows/linst-rst.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/linst-rst.yml b/.github/workflows/linst-rst.yml
index f207e47..94a33f2 100644
--- a/.github/workflows/linst-rst.yml
+++ b/.github/workflows/linst-rst.yml
@@ -14,3 +14,5 @@ jobs:
               uses: docker://oskarstark/doctor-rst
               with:
                   args: --short --error-format=github
+              env:
+                  DOCS_DIR: 'docs/'

From 6f4ee542263ce26871905cb599e760fced51e226 Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 14:02:22 +0200
Subject: [PATCH 3/9] fix path

---
 .github/workflows/linst-rst.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/linst-rst.yml b/.github/workflows/linst-rst.yml
index 94a33f2..9e1e195 100644
--- a/.github/workflows/linst-rst.yml
+++ b/.github/workflows/linst-rst.yml
@@ -15,4 +15,4 @@ jobs:
               with:
                   args: --short --error-format=github
               env:
-                  DOCS_DIR: 'docs/'
+                  DOCS_DIR: '_doc/'

From f5aefe2759bb9ab9e6884ec086289804b56a15e0 Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 14:33:40 +0200
Subject: [PATCH 4/9] check

---
 .github/workflows/codeql.yml         | 61 ++++++++++++++++++++++++++++
 .github/workflows/documentation.yml  |  2 +-
 .github/workflows/linst-rst.yml      | 18 --------
 .github/workflows/rstcheck.yml       | 24 +++++++++++
 .github/workflows/wheels-linux.yml   |  2 +-
 .github/workflows/wheels-mac.yml     |  2 +-
 .github/workflows/wheels-windows.yml |  2 +-
 _doc/api/npx_annot.rst               |  2 -
 _doc/api/npx_functions.rst           |  2 -
 _doc/api/npx_jit.rst                 |  2 -
 _doc/api/npx_numpy.rst               |  2 -
 _doc/api/npx_var.rst                 |  2 -
 _doc/api/onnx_tools.rst              |  2 -
 _doc/api/ort.rst                     |  2 -
 _doc/api/plotting.rst                |  2 -
 _doc/api/tools.rst                   |  2 -
 _doc/examples/plot_onnxruntime.py    |  3 --
 _doc/tutorial/benchmarks.rst         |  2 -
 _doc/tutorial/overview.rst           |  2 -
 azure-pipelines.yml                  |  3 ++
 pyproject.toml                       | 11 +++++
 requirements-dev.txt                 |  1 +
 22 files changed, 104 insertions(+), 47 deletions(-)
 create mode 100644 .github/workflows/codeql.yml
 delete mode 100644 .github/workflows/linst-rst.yml
 create mode 100644 .github/workflows/rstcheck.yml

diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
new file mode 100644
index 0000000..bea1259
--- /dev/null
+++ b/.github/workflows/codeql.yml
@@ -0,0 +1,61 @@
+name: "Code Scanning - Action"
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+  schedule:
+    #        ┌───────────── minute (0 - 59)
+    #        │  ┌───────────── hour (0 - 23)
+    #        │  │ ┌───────────── day of the month (1 - 31)
+    #        │  │ │ ┌───────────── month (1 - 12 or JAN-DEC)
+    #        │  │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT)
+    #        │  │ │ │ │
+    #        │  │ │ │ │
+    #        │  │ │ │ │
+    #        *  * * * *
+    - cron: '30 1 * * 0'
+
+jobs:
+  CodeQL-Build:
+    # CodeQL runs on ubuntu-latest, windows-latest, and macos-latest
+    runs-on: ubuntu-latest
+
+    permissions:
+      # required for all workflows
+      security-events: write
+
+      # only required for workflows in private repositories
+      actions: read
+      contents: read
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+
+      # Initializes the CodeQL tools for scanning.
+      - name: Initialize CodeQL
+        uses: github/codeql-action/init@v2
+        # Override language selection by uncommenting this and choosing your languages
+        # with:
+        #   languages: go, javascript, csharp, python, cpp, java, ruby
+
+      # Autobuild attempts to build any compiled languages (C/C++, C#, Go, or Java).
+      # If this step fails, then you should remove it and run the build manually (see below).
+      - name: Autobuild
+        uses: github/codeql-action/autobuild@v2
+
+      # ℹ️ Command-line programs to run using the OS shell.
+      # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+
+      # ✏️ If the Autobuild fails above, remove it and uncomment the following
+      #    three lines and modify them (or add more) to build your code if your
+      #    project uses a compiled language
+
+      #- run: |
+      #     make bootstrap
+      #     make release
+
+      - name: Perform CodeQL Analysis
+        uses: github/codeql-action/analyze@v2
diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml
index 27f4389..264e105 100644
--- a/.github/workflows/documentation.yml
+++ b/.github/workflows/documentation.yml
@@ -16,7 +16,7 @@ jobs:
       # Used to host cibuildwheel
       - uses: actions/setup-python@v4
         with:
-          python-version: '3.10'
+          python-version: '3.11'
 
       - name: Install requirements
         run: python -m pip install -r requirements.txt
diff --git a/.github/workflows/linst-rst.yml b/.github/workflows/linst-rst.yml
deleted file mode 100644
index 9e1e195..0000000
--- a/.github/workflows/linst-rst.yml
+++ /dev/null
@@ -1,18 +0,0 @@
-# .github/workflows/lint.yaml
-name: RST Format Checker
-on: [push, pull_request]
-
-jobs:
-    doctor-rst:
-        name: DOCtor-RST
-        runs-on: ubuntu-latest
-        steps:
-            - name: "Checkout code"
-              uses: actions/checkout@v2
-
-            - name: DOCtor-RST
-              uses: docker://oskarstark/doctor-rst
-              with:
-                  args: --short --error-format=github
-              env:
-                  DOCS_DIR: '_doc/'
diff --git a/.github/workflows/rstcheck.yml b/.github/workflows/rstcheck.yml
new file mode 100644
index 0000000..143a924
--- /dev/null
+++ b/.github/workflows/rstcheck.yml
@@ -0,0 +1,24 @@
+jobs:
+  build_wheels:
+    name: rstcheck ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+
+    steps:
+      - uses: actions/checkout@v3
+
+      # Used to host cibuildwheel
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.11'
+
+      - name: Install requirements
+        run: python -m pip install -r requirements.txt
+
+      - name: Install requirements-dev.txt
+        run: python -m pip install -rstcheck[toml,sphinx]
+
+      - name: rstcheck
+        run: rstcheck -r _doc onnx_array_api
diff --git a/.github/workflows/wheels-linux.yml b/.github/workflows/wheels-linux.yml
index 8445674..6557751 100644
--- a/.github/workflows/wheels-linux.yml
+++ b/.github/workflows/wheels-linux.yml
@@ -20,7 +20,7 @@ jobs:
       # Used to host cibuildwheel
       - uses: actions/setup-python@v4
         with:
-          python-version: '3.10'
+          python-version: '3.11'
 
       - name: Install cibuildwheel
         run: python -m pip install cibuildwheel
diff --git a/.github/workflows/wheels-mac.yml b/.github/workflows/wheels-mac.yml
index 97f1902..c9ac273 100644
--- a/.github/workflows/wheels-mac.yml
+++ b/.github/workflows/wheels-mac.yml
@@ -20,7 +20,7 @@ jobs:
       # Used to host cibuildwheel
       - uses: actions/setup-python@v4
         with:
-          python-version: '3.10'
+          python-version: '3.11'
 
       - name: Install cibuildwheel
         run: python -m pip install cibuildwheel
diff --git a/.github/workflows/wheels-windows.yml b/.github/workflows/wheels-windows.yml
index eb514ee..cf7e4bd 100644
--- a/.github/workflows/wheels-windows.yml
+++ b/.github/workflows/wheels-windows.yml
@@ -20,7 +20,7 @@ jobs:
       # Used to host cibuildwheel
       - uses: actions/setup-python@v4
         with:
-          python-version: '3.10'
+          python-version: '3.11'
 
       - name: Install cibuildwheel
         run: python -m pip install cibuildwheel
diff --git a/_doc/api/npx_annot.rst b/_doc/api/npx_annot.rst
index 3a4d532..d7e46e3 100644
--- a/_doc/api/npx_annot.rst
+++ b/_doc/api/npx_annot.rst
@@ -1,5 +1,3 @@
-.. _l-api-npx-types:
-
 npx.npx_types
 =============
 
diff --git a/_doc/api/npx_functions.rst b/_doc/api/npx_functions.rst
index 5831cab..bc4810b 100644
--- a/_doc/api/npx_functions.rst
+++ b/_doc/api/npx_functions.rst
@@ -1,5 +1,3 @@
-.. _l-api-npx-functions:
-
 npx.npx_functions
 =================
 
diff --git a/_doc/api/npx_jit.rst b/_doc/api/npx_jit.rst
index fa814cd..05f6fbe 100644
--- a/_doc/api/npx_jit.rst
+++ b/_doc/api/npx_jit.rst
@@ -1,5 +1,3 @@
-.. _l-api-npx-jit:
-
 npx, jit and eager mode
 =======================
 
diff --git a/_doc/api/npx_numpy.rst b/_doc/api/npx_numpy.rst
index e26e17d..deb8c99 100644
--- a/_doc/api/npx_numpy.rst
+++ b/_doc/api/npx_numpy.rst
@@ -1,5 +1,3 @@
-.. _l-api-npx-numpy:
-
 npx.npx_numpy_tensors
 =====================
 
diff --git a/_doc/api/npx_var.rst b/_doc/api/npx_var.rst
index 0985e8b..8041e5e 100644
--- a/_doc/api/npx_var.rst
+++ b/_doc/api/npx_var.rst
@@ -1,5 +1,3 @@
-.. _l-api-npx-var:
-
 npx.npx_var
 ===========
 
diff --git a/_doc/api/onnx_tools.rst b/_doc/api/onnx_tools.rst
index 401eb7d..31cc9c3 100644
--- a/_doc/api/onnx_tools.rst
+++ b/_doc/api/onnx_tools.rst
@@ -1,5 +1,3 @@
-.. _l-api-onnx-tools:
-
 onnx tools
 ==========
 
diff --git a/_doc/api/ort.rst b/_doc/api/ort.rst
index d3de0ba..1a09e3d 100644
--- a/_doc/api/ort.rst
+++ b/_doc/api/ort.rst
@@ -1,5 +1,3 @@
-.. _l-api-ort:
-
 ort
 ===
 
diff --git a/_doc/api/plotting.rst b/_doc/api/plotting.rst
index c70d272..830cc86 100644
--- a/_doc/api/plotting.rst
+++ b/_doc/api/plotting.rst
@@ -1,5 +1,3 @@
-.. _l-api-plotting:
-
 plotting
 ========
 
diff --git a/_doc/api/tools.rst b/_doc/api/tools.rst
index fd9a256..b93d918 100644
--- a/_doc/api/tools.rst
+++ b/_doc/api/tools.rst
@@ -1,5 +1,3 @@
-.. _l-api-tools:
-
 tools
 =====
 
diff --git a/_doc/examples/plot_onnxruntime.py b/_doc/examples/plot_onnxruntime.py
index 52000bc..9b0ac89 100644
--- a/_doc/examples/plot_onnxruntime.py
+++ b/_doc/examples/plot_onnxruntime.py
@@ -1,7 +1,4 @@
 """
-
-.. _l-onnx-array-first-onnxruntime:
-
 First examples with onnxruntime
 ===============================
 
diff --git a/_doc/tutorial/benchmarks.rst b/_doc/tutorial/benchmarks.rst
index ef02a16..f219294 100644
--- a/_doc/tutorial/benchmarks.rst
+++ b/_doc/tutorial/benchmarks.rst
@@ -1,5 +1,3 @@
-.. _l-benchmarks:
-
 ==========
 Benchmarks
 ==========
diff --git a/_doc/tutorial/overview.rst b/_doc/tutorial/overview.rst
index 21aa513..a603b35 100644
--- a/_doc/tutorial/overview.rst
+++ b/_doc/tutorial/overview.rst
@@ -1,5 +1,3 @@
-.. _l-numpy-api-onnx:
-
 ==================
 Numpy API for ONNX
 ==================
diff --git a/azure-pipelines.yml b/azure-pipelines.yml
index 4c4c7e8..4eeed95 100644
--- a/azure-pipelines.yml
+++ b/azure-pipelines.yml
@@ -76,6 +76,9 @@ jobs:
   - script: |
       ruff .
     displayName: 'Ruff'
+  - script: |
+      rstcheck -r _doc onnx_array_api
+    displayName: 'rstcheck'
   - script: |
       black --diff .
     displayName: 'Black'
diff --git a/pyproject.toml b/pyproject.toml
index 1528407..832a027 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,3 +1,14 @@
+[tool.rstcheck]
+report_level = "INFO"
+ignore_directives = [
+    "autoclass",
+    "autofunction",
+    "gdot",
+    "image-sg",
+    "runpython",
+]
+ignore_roles = ["epkg"]
+
 [tool.ruff]
 
 # Exclude a variety of commonly ignored directories.
diff --git a/requirements-dev.txt b/requirements-dev.txt
index 6e774f0..f30d07f 100644
--- a/requirements-dev.txt
+++ b/requirements-dev.txt
@@ -16,6 +16,7 @@ psutil
 pyquickhelper
 pytest
 pytest-cov
+rstcheck[toml,sphinx]
 ruff
 scikit-learn
 skl2onnx

From 8877323e0156655872d5f75b4bd12a4bd6945286 Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 14:35:17 +0200
Subject: [PATCH 5/9] rstcheck

---
 .github/workflows/rstcheck.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/rstcheck.yml b/.github/workflows/rstcheck.yml
index 143a924..c378fb8 100644
--- a/.github/workflows/rstcheck.yml
+++ b/.github/workflows/rstcheck.yml
@@ -1,3 +1,7 @@
+name: rstcheck
+
+on: [push, pull_request]
+
 jobs:
   build_wheels:
     name: rstcheck ${{ matrix.os }}

From 15225fbfd1e93c193f4019dec65836da81f3ed33 Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 14:36:37 +0200
Subject: [PATCH 6/9] fix import

---
 .github/workflows/rstcheck.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/rstcheck.yml b/.github/workflows/rstcheck.yml
index c378fb8..32d61cf 100644
--- a/.github/workflows/rstcheck.yml
+++ b/.github/workflows/rstcheck.yml
@@ -22,7 +22,7 @@ jobs:
         run: python -m pip install -r requirements.txt
 
       - name: Install requirements-dev.txt
-        run: python -m pip install -rstcheck[toml,sphinx]
+        run: python -m pip install rstcheck[toml,sphinx]
 
       - name: rstcheck
         run: rstcheck -r _doc onnx_array_api

From 5f0ab24f0a86b1488df202f499773ce5b253a26d Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 14:42:43 +0200
Subject: [PATCH 7/9] =?UTF-8?q?az=C3=A9?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 azure-pipelines.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/azure-pipelines.yml b/azure-pipelines.yml
index 4eeed95..f972b3a 100644
--- a/azure-pipelines.yml
+++ b/azure-pipelines.yml
@@ -77,7 +77,10 @@ jobs:
       ruff .
     displayName: 'Ruff'
   - script: |
-      rstcheck -r _doc onnx_array_api
+      rstcheck --help
+    displayName: 'rstcheck help'
+  - script: |
+      rstcheck -r ./_doc ./onnx_array_api
     displayName: 'rstcheck'
   - script: |
       black --diff .

From 979e9b61d4c83220cdfbb4c70904b76c13707512 Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 14:54:35 +0200
Subject: [PATCH 8/9] ci

---
 .github/workflows/documentation.yml | 17 ++++++++++++++++-
 requirements-dev.txt                |  3 ++-
 2 files changed, 18 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml
index 264e105..dcc6d51 100644
--- a/.github/workflows/documentation.yml
+++ b/.github/workflows/documentation.yml
@@ -1,6 +1,21 @@
 name: Documentation
 
-on: [push, pull_request]
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+  schedule:
+    #        ┌───────────── minute (0 - 59)
+    #        │  ┌───────────── hour (0 - 23)
+    #        │  │ ┌───────────── day of the month (1 - 31)
+    #        │  │ │ ┌───────────── month (1 - 12 or JAN-DEC)
+    #        │  │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT)
+    #        │  │ │ │ │
+    #        │  │ │ │ │
+    #        │  │ │ │ │
+    #        *  * * * *
+    - cron: '30 1 * * 0'
 
 jobs:
   build_wheels:
diff --git a/requirements-dev.txt b/requirements-dev.txt
index f30d07f..6178c1b 100644
--- a/requirements-dev.txt
+++ b/requirements-dev.txt
@@ -16,12 +16,13 @@ psutil
 pyquickhelper
 pytest
 pytest-cov
-rstcheck[toml,sphinx]
+rstcheck[sphinx,toml]
 ruff
 scikit-learn
 skl2onnx
 sphinx
 sphinx-gallery
+tomli
 tqdm
 wheel
 xgboost

From 1e4834c09a5e7584551ae908bba580b8073c2960 Mon Sep 17 00:00:00 2001
From: xadupre <xadupre@microsoft.com>
Date: Fri, 2 Jun 2023 15:00:38 +0200
Subject: [PATCH 9/9] fix rstchecker

---
 .github/workflows/rstcheck.yml | 6 +++---
 azure-pipelines.yml            | 3 ---
 2 files changed, 3 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/rstcheck.yml b/.github/workflows/rstcheck.yml
index 32d61cf..3d4b2cc 100644
--- a/.github/workflows/rstcheck.yml
+++ b/.github/workflows/rstcheck.yml
@@ -1,4 +1,4 @@
-name: rstcheck
+name: RST Check
 
 on: [push, pull_request]
 
@@ -21,8 +21,8 @@ jobs:
       - name: Install requirements
         run: python -m pip install -r requirements.txt
 
-      - name: Install requirements-dev.txt
-        run: python -m pip install rstcheck[toml,sphinx]
+      - name: Install rstcheck
+        run: python -m pip install sphinx tomli rstcheck[toml,sphinx]
 
       - name: rstcheck
         run: rstcheck -r _doc onnx_array_api
diff --git a/azure-pipelines.yml b/azure-pipelines.yml
index f972b3a..50b1795 100644
--- a/azure-pipelines.yml
+++ b/azure-pipelines.yml
@@ -76,9 +76,6 @@ jobs:
   - script: |
       ruff .
     displayName: 'Ruff'
-  - script: |
-      rstcheck --help
-    displayName: 'rstcheck help'
   - script: |
       rstcheck -r ./_doc ./onnx_array_api
     displayName: 'rstcheck'